Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1781 |
Symbol | |
ID | 3908862 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 2042291 |
End bp | 2043694 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637883675 |
Product | type II secretion system protein E |
Protein accession | YP_485400 |
Protein GI | 86748904 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.615567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.227871 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCCCGG CTCCGGAGCC GATGTCACGC GCGCCCGAGG CGCCGTCCGC GGTCGCCTCG CCGCCGCTCG CACCGAACCG CGCGCCGCCG CCGCCGCCCC AGGCCGAAGC CCGCCGCTCC GACAATTACT ACCAGGTCAA GGCGACGATC TTCGGCGCGC TGATCGAGGC GATCGACCTG GCGCAGCTCG CCAAGCTCGA CGCCGAATCC GCGCGCGAAG AAATCCGCGA CATCGTCAAC GAGATCATCG CGATCAAGAA CATCGTGATG TCGATCTCCG AGCAGGAGGA ACTGCTCGAC GACATCTGCA ACGACGTGCT CGGCTACGGC CCGCTGGAGC CGCTGCTGTC GCGCGACGAC ATCTCCGACA TCATGGTCAA CGGCGCCGGC ACGGTGTTCA TCGAAGTCGC CGGCCGGATC CAGCGCACCG GCATCCGCTT CCGCGACAAT CAGCAGCTCC TCAACATCTG CCAGCGCATC GTCAGCCAGG TCGGCCGGCG CGTCGACGAA TCCTCGCCGA TCTGCGACGC CCGCCTCGCC GACGGCAGCC GCGTCAACGC CATCGTGCCG CCGCTGGCGA TCGACGGCCC CGCGCTCACC ATCCGCAAAT TCAAGAAGGA CAAGCTGACG CTCGACCAGC TCGTCAAATT CGGCGCGATC ACGCCGGAGG GCGCGCAGAT CCTGCAGATC ATCGGCCGCA CCCGCTGCAA CGTGCTGATC TCCGGCGGCA CCGGCTCCGG CAAGACCACG CTGCTGAACT GCCTGACCAA CTACATCGAC GACGACGAGC GCATCATCAC CTGCGAAGAC GCCGCCGAAC TGCAGCTGCA GCAGCCGCAC GTGGTGCGCC TCGAAACCCG GCCGCCGAAC ATCGAGGGCG AAGGCCAGGT GACGATGCGC GAACTGGTGC GCAACTGCCT GCGTATGCGG CCGGAACGGA TCATCGTCGG CGAAGTCCGC GGACCGGAGG CGTTCGACCT GTTGCAGGCG ATGAACACCG GCCACGACGG TTCGATGGGC ACGCTGCACG CCAACAACCC GCGCGAGGCG CTGTCGCGCT GCGAGTCCAT GATCACCATG GGCGGCTTCT CGCTGCCCTC GCGCACCATC CGCGAGATGA TCTGCGCCTC GATCGACGTC ATCATCCAGG CCGCACGGCT GCGCGACGGC TCGCGCCGGA TCACCCACAT CACCGAGGTG ATGGGGATGG AAGGCGACAC CATCATCACC CAGGATCTGT TCATCTACGA CATCATCGGC GAGGACGCCA ACGGCCACAT CGTCGGCCGG CATCGCTCGA CCGGGATCGG CAGGCCGCGG TTCTGGGAAC GCGCGCGCTA TTACGGCGAG GAAAAGCGGC TCGCCGCGGC GCTCGACGCC GCCGAAGTCG CAGCCGTCAC CTGA
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Protein sequence | MSPAPEPMSR APEAPSAVAS PPLAPNRAPP PPPQAEARRS DNYYQVKATI FGALIEAIDL AQLAKLDAES AREEIRDIVN EIIAIKNIVM SISEQEELLD DICNDVLGYG PLEPLLSRDD ISDIMVNGAG TVFIEVAGRI QRTGIRFRDN QQLLNICQRI VSQVGRRVDE SSPICDARLA DGSRVNAIVP PLAIDGPALT IRKFKKDKLT LDQLVKFGAI TPEGAQILQI IGRTRCNVLI SGGTGSGKTT LLNCLTNYID DDERIITCED AAELQLQQPH VVRLETRPPN IEGEGQVTMR ELVRNCLRMR PERIIVGEVR GPEAFDLLQA MNTGHDGSMG TLHANNPREA LSRCESMITM GGFSLPSRTI REMICASIDV IIQAARLRDG SRRITHITEV MGMEGDTIIT QDLFIYDIIG EDANGHIVGR HRSTGIGRPR FWERARYYGE EKRLAAALDA AEVAAVT
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