Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1735 |
Symbol | |
ID | 3909722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 1981409 |
End bp | 1982758 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637883629 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_485354 |
Protein GI | 86748858 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0819299 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTCCGA TCATCACGAA AACGCCGCGG ATAGCGGCCT GCGTGATCGC ATTGCTGGGG CTGGGGCTGC ACGCCACCAG CAGCGTGGCG GAACCGGCCG GCGCGCCGGC CGCGGATCCA CCCCGGGCGC TGGCCGATTG GGGTGTCCAG TTCAGCGCCA CCTACATCGG CGAAACGCTG GCCGACGTGT CCGGTGGCAT GAGACGCGGG ACGATCTATG CGGGTCGTCT CGATCTCGGC ACCACCGTCG ATCTCGACCG GCTGTTCGGC TGGCACGGCG CGACCTTTCA CGCCAACCTG TTTCAGATCC ACGGCAACAA TTTGTCGCGC AACTATGTCG GCAATCTGCT GCTGGTGAGC GGCATCGAAT CGCTGCCGGC GACCCGGCTC TACGAGGCCT GGATCGAACA ATCGATGCTC GGCGGCGCGC TGTCCATCAA GGTCGGGCAG CAATCCGCCG ACACCGAATT CGTCGACAGC CGCTATCTCG ACATGTTCGT CAACGCCGCC CTGGGCTGGC CCGGTCTCAC CGGCGTCGTG CTGCCGAGCG GAGGGCCGTC GCCGCCACTG GCGGTGCCGG GTGTCCGCAT CAAGGCGCGG TTCGGCGACA AGCTCACCGC CTCGGTCGCG GTGTTCGACG GCGATGCCGC GCCGCCCGGT CCCGGCGATC CGCAGAGCAG GAATCCGAAC GGGTTGCTGT TTCGCGTGCA CGACCCGGCC TGGCTGATCG GACAAGTGAA ATACGGTTTC GGCAATGGCA ACGGAATGCC TTCCGGCATC ACCGCCGGTG CCTGGTATCA TTTCGGCACG TTCGACAGCC AGCGCTTCAC CGCGCAGGGC TCCTCGGTCG CAGATCCCGC GGGCTCCGGG CTGCCGGCCA GGCTGCGCGG CGATCAGGGC GTGTTCGCAG TCTACGAGCA GCCGCTGTCC CACAGCGCCG CCGATCCGGC CAAAGGCACC GGCTTGGTCG CGCGCGTGCT GGCGAGCCCG TCGGACCGCA ACCTGATCAG CTTCTATGTC GATGCGGCAT TGCTGTTCAC CGGCTTCAGC CCGTCGCGCC CGGACGACAA GTTCGGCGTG GCGATCAGTT ACGCCCGGAT CTCGGATGCG GCACGCGCGC TCGATCGCGA CGTGCGGCGC TGGAGCGGCA TCGCGTCGCC GGTCCGCGAC TTCGAGGCCG TGATCGAGCT GACCTATCTG GCGCAAATCA CCGGCAATTT CGCTGTCCAG CCGGTGATCG AATACGTGAT GCATCCAGCC GGCGGCGCGA CCGATCCGTT CGATCCCGCC GGGACCAGGC GGATCAGGGA CGCGGTGGTG CTCGGCATCC GCACCACGCT GAGCTACTGA
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Protein sequence | MLPIITKTPR IAACVIALLG LGLHATSSVA EPAGAPAADP PRALADWGVQ FSATYIGETL ADVSGGMRRG TIYAGRLDLG TTVDLDRLFG WHGATFHANL FQIHGNNLSR NYVGNLLLVS GIESLPATRL YEAWIEQSML GGALSIKVGQ QSADTEFVDS RYLDMFVNAA LGWPGLTGVV LPSGGPSPPL AVPGVRIKAR FGDKLTASVA VFDGDAAPPG PGDPQSRNPN GLLFRVHDPA WLIGQVKYGF GNGNGMPSGI TAGAWYHFGT FDSQRFTAQG SSVADPAGSG LPARLRGDQG VFAVYEQPLS HSAADPAKGT GLVARVLASP SDRNLISFYV DAALLFTGFS PSRPDDKFGV AISYARISDA ARALDRDVRR WSGIASPVRD FEAVIELTYL AQITGNFAVQ PVIEYVMHPA GGATDPFDPA GTRRIRDAVV LGIRTTLSY
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