| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1705 |
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| Symbol | |
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| ID | 3908230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 1940200 |
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| End bp | 1941177 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883599 |
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| Product | 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD |
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| Protein accession | YP_485324 |
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| Protein GI | 86748828 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0346] Lactoylglutathione lyase and related lyases |
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| TIGRFAM ID | [TIGR02295] 3,4-dihydroxyphenylacetate 2,3-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.159333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.870304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTGTGC CGCAGCACGT ATTCGACCCG CCGTTCAACA TCATCCGTTG CAGTCACGTC
GTGCTCGACG TCACCGACCT TTCCGCCAGC GTCGATTTCT ATGCCGACAT CATCGGCCTG
CATGTCGAGG ATCGCGACGA CGCCACCGCC TATCTACGCG GCAGCGAGGA GCATCAGCAT
CACTCGGTGG TACTGCGCCA GGCGGACAAG CCGGCCGCGG CGCGGCTCGG CTTTCGCGTC
GGCACCGAAG CCGATCTCGA CAAGGCCGGC AGCTTCTTCG CCGAGAATGG GCTGATCTAC
AGCTTCGTCG ATCGCCCATT CCAGGGCCGC ACGCTGCACG TCACCGACCC GTTCGGCTTC
CGGCTCGAGT TCTGCGCCAG CATGGAGAAG CGGCCGCATC TTCTGCGCCG CTACGAATTG
TACAAAGGCT GTCACCCGCA GCGGCTCGAC CATTTCAACG TCTTCGCGGC CGAGACTCAG
GAGACCATCG ACTTCTACGC CCGGCTCGGC TTTCGCCTCA CCGAATACGC CGAAGAGGAC
GGCGACAACG GCCGCATCGC CGCGGCCTGG ATGCATCGCA AAGGCAACGT CCACGACTTC
GCCGTCACCA ACGGCCGCGG CCCGCGGCTG CATCATTTCG CCTATTGGGT GCCCGGTCCG
CTCAACATCA TCCATCTCTG CGACGTGATG GCGTCGCGGG GGCTCGGCCT CGAGCGCGGC
CCGGGCCGCC ACGGCATCTC GAACGCCTTC TTTCTCTACG TCCGCGATCC CGACGGCCAT
CGTATCGAGC TGTATTGCAG CGACTATCAG ACCATGGACC ACGACCACGC CCCGCTGCGC
TGGTCGCTAC GCGACCCGCG CCGGCAGACG CTGTGGGGCG CGCCGGCGCC GCGCTCCTGG
TTCGAGCAGG GCTCGGATTT CCTCGGCGAG ACGGTTCGCG AGCCGGCATT CGTGGCCGAT
GTGATGATTG CGGATTGA
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| Protein sequence | MPVPQHVFDP PFNIIRCSHV VLDVTDLSAS VDFYADIIGL HVEDRDDATA YLRGSEEHQH
HSVVLRQADK PAAARLGFRV GTEADLDKAG SFFAENGLIY SFVDRPFQGR TLHVTDPFGF
RLEFCASMEK RPHLLRRYEL YKGCHPQRLD HFNVFAAETQ ETIDFYARLG FRLTEYAEED
GDNGRIAAAW MHRKGNVHDF AVTNGRGPRL HHFAYWVPGP LNIIHLCDVM ASRGLGLERG
PGRHGISNAF FLYVRDPDGH RIELYCSDYQ TMDHDHAPLR WSLRDPRRQT LWGAPAPRSW
FEQGSDFLGE TVREPAFVAD VMIAD
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