| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1637 |
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| Symbol | |
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| ID | 3909914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1845713 |
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| End bp | 1852096 |
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| Gene Length | 6384 bp |
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| Protein Length | 2127 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637883531 |
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| Product | VCBS |
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| Protein accession | YP_485256 |
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| Protein GI | 86748760 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGC TGATCAAGAT GGCCCAACTG CAATTGTCGG AAGCGACGAC CAGCGCGGTT
GGTCTGAAGA CGTTCAAGGT CTCCAAGCCC GAAACGGGGC AAGCTCTCGC GATTCAACTC
GATGGAAAAT CCGTCGTCGA TCTGACGAGC TTCGCCGACG AGAAGATCAC GCTTGTGCGG
CTGGGCAATC GGCTGGTCAT CCTGTTCGAC AACCAGTCGA CCGTCACGAT CAATCCATTT
TATGACGCGC TCGGCCGACC GATCGCTGAT GTCTCGCTTC AGGTGTCGCA GGGGCAGCCG
ATCAGCGGCG CCGAATTTGT GGCTTCGTTC CCGATCTCGA CGGACCAGTC CATTCTGCCG
GCCGCGGGAG CTGGTGGTCC CGCGCCGGTG GCGTCGAGTG CAAGCTTCTC TGACATCACT
ATCGATCAGC TCAACCCGTC AGGAAATGGA ATTGGTTCGC GCGCTCCGGT CGAGACCGGA
GTGGTGACAA CCACGATCCG TGACGTCTTT GAGCCAGGCA GTGGATCTCC GTTAGGTGAT
ACCAACGACG CAGCTGTCAT CACCGGAACC AGCACGGCGT CGCTGCTCGA GGCCGACGTG
GTGCTGGGCA CCGGCGGCAC GCTGGTGGCG AGCGATCCCG ACAGTTCGAA CGCCTTCGTG
CCGCAGGCCG CGGTGGCCGG TAGCAACGGT TACGGCAACT TCAGTATCGA CGCTGCGGGG
GTGTGGACCT ACGCCATGAC CACCCCTCAC AACGAGTTCG TAGGCGGCGT CGATTACACC
GACAGCGTGA CGGTGGCGAC AGTCGACGGC ACCACCCAGG TCGTCACGGT GACCATCACC
GGCACCGACG ACGCGACGGT GATCACGGGA GCGAGCACGG CGACGCTGAT CGAGGCCGAC
GTGGTGCTGA GCACCGGCGG CACGCTGGTG GCCAGCGATC CCGACAGTTC GAACGCCTTC
GTGCCGCAGG CCGCGGTGGC CGGCAGCAAC GGTTACGGCA ACTTCAGTAT CGACGCTGCG
GGGGTGTGGA CCTACGCCAT GACCACCCCT CACAATGAAT TTGTGGGTGG CGTCGACTAC
ACCGACAGCG TGACGGTGGC GACCGTCGAC GGCACCACCC AGCTCCTCAC CGTGACCATC
ACCGGCACCG ACGACGCGAC GGTGATCGCG GGGTTCAGCA CGGCGACGCT GACCGAGGCC
GACGTGGTGC TGAGCACCGG TGGCACGCTG GTCGCCAGCG ATCCCGACAG TTCGAACGCC
TTCGTGCCGC AGGCCGGGGT CGCCGGTAGC AACGGTTACG GCAGCTTCAG CATCGACGCC
GCCGGGGTGT GGACCTACAG CCTGACCACC GCCCATGACG AGTTCGTGGG CGGCTTCGAC
TACACCGACA GCATGACGGT TGCGACGGTG GATGGCACCA CGCAGCTCGT CACGGTGACC
ATCACCGGCA CCAACGACGC GGCGGTGATC ACGGGGACCA GCACGGCTTC GCTGGTCGAG
GCCGACGCCG TGCTGACTAC TGGCGGCACC CTGGTCGCGA GCGATATCGA CAACTTGAAC
GCATTCGTGG TGCAGACCGG GGTGGCCGGC AGCAATGGCT ACGGCACCTT CAGCATCGAC
GCTTCGGGCG CGTGGACCTA CAGCATGACC ACCGCCCACG ACGAGTTTGT GGAGGGCGTC
GACTACACCG ACAGCATCAC GGTTACGACG GTCGACGGGA CCACGCAGCT CGTCACGGTG
ACCATCACCG GTACCGACGA CGCGACGGTC GTGTCGTCGG CCGATGTGTC GGTTGCTGAG
GGCAATGCGC CGATTTCGAC CGGCGGCACG CTCACGATCA GCGACGTCGA CAGCGCGGTG
ACCTTCGTGG CGCAGCCCGG CACGCCCGGA GCGCACGGCA TTTTCTCGAT CGGGACGAAT
GGCGCCTGGA CCTACGTGGC GAACGACGCG TTCGACGGCC TGAATGTTGG GCAGAGCGTG
AGTGACACCT TCTCGGTGTC GGCAGCGGAC GGCACGCTGA CGTCGGTGCA GGTGACGATC
ACCGGGACCA ACGACCTGGC GTTCGTGTCG TCAGCCGATG TGTCGGTTGC GGAGGACAAT
GCTCCGATTT CGACCGGTGG CACGCTGACG ATCAGTGACG TCGACAGCGC GGCGACCTTC
GTGGAACAGT CCGGCACGCC CGGAGTGCAC GGCATTTTCT CGATCGGGAC GAATGGCGCC
TGGACCTACG TGGCGAACGA CGCGTTCGAG AGCCTGAGTG TCGGGCAGAG CGTGAGCGAC
ACCTTCTCGG TGTCGGCAGC GGACGGCACG CTGACGTCGG TGCAGGTGAC GATCACCGGG
ACCAACGACG CGCCGGTGAT CACGGTTGCG AGTCCCGACA GCTCGTCCGC ATCGCTGACG
GAAAGCGACG CTGCATTAAC TGCCTCAGGC ACACTGACAG TGACGGACGT CGACGTCAGC
AACACCGTCA CCGCCTCGGT GCAGAGCGTC GTGGTGGCCG GCCCAAGCGG TGGCCTTAGC
AGTGCGGCTC TGCTGGCGAT GCTGGCAGTG CCGGGCGCCG CGATCGCGGC GGACCCGACC
GACGCGCATA ATCTGGCCTG GACGTTCAAC TCGGCGCCGC AGGCGTTTGA CTTCCTTGCG
CAGGGTGAGA CCCTGAGCCT GACCTATACG GTCGGAGTGC AGGACGGCGC TGGCGGCTCC
GACACGCAGA CTGTGACCGT AACCGTTGCG GGCACTAATG ACACGCCGGT TTTGATCACG
GGTCCTGGCT ACAGCGAACC GGCTTCGCAA ATGACCGGGG CGGTCACCGA AGATGCGGCG
GCCAATCAGG TCCGCGGCAT CGTCAATGTT TTCGATGCCG ATAACGGCCA TGGTCTGACT
GCCGTCATCG ATAATCCGAA CGGCACTTAC GGCACGCTCG CCCGGGACAC CTGGGTGGAC
GGCAATGGTG ACACCCAGGA CGGCTGGGTC TACACGCTCG ACAATACGCG GAGTGCGACG
CAGGCCCTGA AGGAAGGCGA GGTTCAGACA GAGACCTTCA CCTTCAAGGT GATGGACGAG
CACGGCGCGA TTGACACGGA GACCGTGACC ATCACGGTCA CCGGCAATAA CGACGCGCCG
ATAGTCGCGC ATGCCATCAC CAATCAGACG CTGCTGGAGG ATCACGCCTG GACGTTCCAG
GTTCCGGCAG ACACTTTTGC CGACGTCGAC GGTCCGCCGC TGGAATATTC GGCGTTCCTC
GCGAATGGTG ATCCGCTGCC CGATGGCATG CATTTCGATC CGGCGACTTT GACGTTCACC
GGCACGCCTC CGCTGAACGA GACCCATTCG CCAGATCTGA AGGTTGTGGC GTGGGACGGC
GAGTTTTCGG CCGAGGCGTA CTTCACGCTG AATATCACGC CGGTTAACGA TGCGCCGGCG
GGCACCAACG GTGCGGTGAC GACGCTGGAA GACATCGCCT ACACCCTCAC GCTTGCGGAT
TTCGGGTACA CCGACGCGAA CGACGATCCG GCGAATACTC TGCTGGGCGT GAAGATCACC
ACGCTGCCGG GCGCCGGAAC GCTGGCGCTC GACGGCCATC CGGTGACGGC GGGAGCAACG
GCGTCGGCTG CGGATATCTT GGCCGGTAAG CTGCAATTCG TGCCGGCGGC GAATGCCAAC
GGCAGCAACT ATGCGAGCTT CACGTTCCAG GTGCAGGACG ATGGCGGAAC CGCCAATGGC
GGCGTTGACC TCGATCCGTT AGCCAATACG CTGACCATCA ACGTCACACC GGTCAACGAT
GCGCCGGTGC TGTCGGGTCA CGAAAATCCG AGCGCGATTG CAGAAGACAG CGGCGCTGCT
GGTGCTGCCA CGACGGTGGC GCACCTTCTC GGCCTCGACG ACGTCAATCC GGCGAACGAC
CATGCCATCG ATGTCGATGC CGCGTCTCTC GGCATCGTCA TCACGGCGGT CGATGACTCC
CACGGAGTCT GGCAGTTTCA ATCCGGCGGC GGCACGTGGA CCGATGTTGA TCTCGCCCCG
GGCGAGGGGC TTCATCTGGC GCAGACTGAT GCTCTTCGCT TTATCCCTTC GCGGAACGTC
CAGACAACCG ATGCCACGCT GTTCGATGCG TCGGGCAACC CGGTCCTGGG GTCGACCAAC
CCCTCTTTTG TTGCCGAGCC CCCCGGCCTC ACCTTCCGTG CCTGGGATAT GTCCAATGGT
ATCGCCGCAG GAATCACCGC GCTGGTTGTG GGCTTCGGCG GGACCTCGGC CTATAGCGCC
ACGGCCGAGA CGGCATCGCT GGTTGTCACC GGAACGCTGG ATCGTGTCTT CACGAACGGA
GACGATACGG TCGACCTGAC GGGTCTGTCG AATGATCCGG CGGTCGACGC TGTCTGGTTC
GAAGACCAGA ACTTCTTCGA TGCAGGGGAG GGTGACGATA ACATCGTGCT GCCGCGCATG
GCGGGTCCGC CGGGTCCAGA TCCGCTCGCT CCCGTGTACC AAAACCAGAC GTTCCATTTG
GGGGCAGGCG ACGATACCGC AGACGCGAGC GCGACCATCG GCATGACCAT TCTCGGCGGC
GACGGTGCGG ATCGTACGAT CGCTTCGGCC GAGACCACCG ATCTTGCCTT TGCGGGCGGG
GGCGACGAAT CGACCGATGT CTTGCAAGTC GACGCGATTG CCGACGCGAT CGTCGACAAG
ACCGGCACAC TGAGCGGCAA CTACAATGCA TTCGATGTCG GTTGGAACGG TTCGCGTCAT
GTGGTCGCGA CGGAGATCGA GCATATCGAA ATCTCCGGCA CCGGCGCGGG TTCGACCCTG
ACGGTGTTGG CCGATGATTT CGATCCCGAT CCCGTACAGC CGCATGACGA ACGAATCGCG
GTCACCGACC AGAGCGTCGA CGGCTTTACC GTGGAGTTCG CCGAGAGCCT GGAACAGGTG
CGGGGCAGCG GTTACGGCCG GCTGCTGATC GACGGCCGCC GTGGCGACGA CAGCATTGAT
TTCACCGGGC TGAAAGCCGG CGGCACCAAT GGTCTCAATG ACGACATCAG CGCCCTCGAA
GTGCGCGGCG GGGAGGGCGA GGACCAGTTC GTGTTCGGCG TCGACAGCGT CGCCGCGACG
GTGGTCGGCG GTCTCGAATC GGATCTGTTG CGGTTCGGTG GCGATACGGT GATCGCCAAG
CAGGTCGGCG ACGCCGTCGT CGACAAGACC GGCACATTGA GCGGCAACTA CAACGCGTTC
GACGTCAGTT GGAACGGCTC GCGTCATGTG ACCGCAACGG AGATCGAGCG TGTCGAAATC
TCCGGCACCG GCGCGGGCTC GACCCTGACG GTGCTGGCCG ATGATTTCGA TCCCGATCCC
GCACAGCCGC AGGACGAACG AATCGAGGTC ACCGACCAGA GCGTCAACGG CTTCACCGTG
GAGTTCGCCG AGAGCCTGGA GCAGGTGCAG GGCAGCGGCT ACGGCCGGCT GGTGATCGAC
GGACGCCGTG GTGACGACAG CATCGATCTC ACCGGGCTGA AAGCCGGCGG CCTCAATCGC
CTCAACGACA GCATCGACGC CGTCGAATTG CGCGGCGGTG AGGGCGAGGA TCGGTTCGTG
TTCGGCGTCG ACAGCGTCGC CGCGACGGTG ATCGGCGGCG TCGAAACCGA TCTGCTGCGG
TTCGGTGGCG ACACCGTCGT CGCTCAACAT GTCGGCGACG CCATCGTCGA CAAGACCGGC
ATGCTGAGCG GCAACTACAA TGCATTCGAC GTCAGCTGGG GCGGTTCGCG CCAGATCACC
GCGACGGAGA TCGAGCGTAT CGAGATCTCC GGCACCGGCG CGGGATCGAC CCTGACGGTC
CTGGCCGACG ATTTCGATCC CGATCCAGGA CAGCCAGGCG ACGAACGAAT CGAGGTCGCT
GACGACGGCC TGAGCCGCTT CACCATCGGG TTCGCCGAGA GTCTCGAGCA GGTGCAGGGA
AGTGACTACG ATTACCTGGT GATGGACGGT CGCGGTGGCG ACGACATGTT CGATCTGTCC
AAGCTGACGG CGGCGTCGGG GCTCACCTCG GTCGAGCTGA CCGGCGGTGA CGGCAGGGAC
GAATTCATCC TCGGTTCGGC GAATCCGTTG ATCAAGATCA CCGATTTCGG CGTCGGCGCA
ACGCCCAACG ATCTGCTCGA TCTTTCACAG CTCCGCGCCG CGGGCGTCGA TGCTGACGAC
ATCATCTTCG ACGACGGAAG TAACGAGATC AGTCTCGGCG ATCTACTGGG AGGCAGTACG
ACCAATTTGT CCGGCACCGT CCAGGTGCTC GACGCCAGCG GCGGCAGCAA CGTCGTCGTC
GCAGAGTTCA ATATGGTGGG TAGTACCATC AATCAGGACA TGATGCAGCT GGTGTGGCAG
CACGTCGAAA CAATCACCGT CTAG
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| Protein sequence | MNALIKMAQL QLSEATTSAV GLKTFKVSKP ETGQALAIQL DGKSVVDLTS FADEKITLVR
LGNRLVILFD NQSTVTINPF YDALGRPIAD VSLQVSQGQP ISGAEFVASF PISTDQSILP
AAGAGGPAPV ASSASFSDIT IDQLNPSGNG IGSRAPVETG VVTTTIRDVF EPGSGSPLGD
TNDAAVITGT STASLLEADV VLGTGGTLVA SDPDSSNAFV PQAAVAGSNG YGNFSIDAAG
VWTYAMTTPH NEFVGGVDYT DSVTVATVDG TTQVVTVTIT GTDDATVITG ASTATLIEAD
VVLSTGGTLV ASDPDSSNAF VPQAAVAGSN GYGNFSIDAA GVWTYAMTTP HNEFVGGVDY
TDSVTVATVD GTTQLLTVTI TGTDDATVIA GFSTATLTEA DVVLSTGGTL VASDPDSSNA
FVPQAGVAGS NGYGSFSIDA AGVWTYSLTT AHDEFVGGFD YTDSMTVATV DGTTQLVTVT
ITGTNDAAVI TGTSTASLVE ADAVLTTGGT LVASDIDNLN AFVVQTGVAG SNGYGTFSID
ASGAWTYSMT TAHDEFVEGV DYTDSITVTT VDGTTQLVTV TITGTDDATV VSSADVSVAE
GNAPISTGGT LTISDVDSAV TFVAQPGTPG AHGIFSIGTN GAWTYVANDA FDGLNVGQSV
SDTFSVSAAD GTLTSVQVTI TGTNDLAFVS SADVSVAEDN APISTGGTLT ISDVDSAATF
VEQSGTPGVH GIFSIGTNGA WTYVANDAFE SLSVGQSVSD TFSVSAADGT LTSVQVTITG
TNDAPVITVA SPDSSSASLT ESDAALTASG TLTVTDVDVS NTVTASVQSV VVAGPSGGLS
SAALLAMLAV PGAAIAADPT DAHNLAWTFN SAPQAFDFLA QGETLSLTYT VGVQDGAGGS
DTQTVTVTVA GTNDTPVLIT GPGYSEPASQ MTGAVTEDAA ANQVRGIVNV FDADNGHGLT
AVIDNPNGTY GTLARDTWVD GNGDTQDGWV YTLDNTRSAT QALKEGEVQT ETFTFKVMDE
HGAIDTETVT ITVTGNNDAP IVAHAITNQT LLEDHAWTFQ VPADTFADVD GPPLEYSAFL
ANGDPLPDGM HFDPATLTFT GTPPLNETHS PDLKVVAWDG EFSAEAYFTL NITPVNDAPA
GTNGAVTTLE DIAYTLTLAD FGYTDANDDP ANTLLGVKIT TLPGAGTLAL DGHPVTAGAT
ASAADILAGK LQFVPAANAN GSNYASFTFQ VQDDGGTANG GVDLDPLANT LTINVTPVND
APVLSGHENP SAIAEDSGAA GAATTVAHLL GLDDVNPAND HAIDVDAASL GIVITAVDDS
HGVWQFQSGG GTWTDVDLAP GEGLHLAQTD ALRFIPSRNV QTTDATLFDA SGNPVLGSTN
PSFVAEPPGL TFRAWDMSNG IAAGITALVV GFGGTSAYSA TAETASLVVT GTLDRVFTNG
DDTVDLTGLS NDPAVDAVWF EDQNFFDAGE GDDNIVLPRM AGPPGPDPLA PVYQNQTFHL
GAGDDTADAS ATIGMTILGG DGADRTIASA ETTDLAFAGG GDESTDVLQV DAIADAIVDK
TGTLSGNYNA FDVGWNGSRH VVATEIEHIE ISGTGAGSTL TVLADDFDPD PVQPHDERIA
VTDQSVDGFT VEFAESLEQV RGSGYGRLLI DGRRGDDSID FTGLKAGGTN GLNDDISALE
VRGGEGEDQF VFGVDSVAAT VVGGLESDLL RFGGDTVIAK QVGDAVVDKT GTLSGNYNAF
DVSWNGSRHV TATEIERVEI SGTGAGSTLT VLADDFDPDP AQPQDERIEV TDQSVNGFTV
EFAESLEQVQ GSGYGRLVID GRRGDDSIDL TGLKAGGLNR LNDSIDAVEL RGGEGEDRFV
FGVDSVAATV IGGVETDLLR FGGDTVVAQH VGDAIVDKTG MLSGNYNAFD VSWGGSRQIT
ATEIERIEIS GTGAGSTLTV LADDFDPDPG QPGDERIEVA DDGLSRFTIG FAESLEQVQG
SDYDYLVMDG RGGDDMFDLS KLTAASGLTS VELTGGDGRD EFILGSANPL IKITDFGVGA
TPNDLLDLSQ LRAAGVDADD IIFDDGSNEI SLGDLLGGST TNLSGTVQVL DASGGSNVVV
AEFNMVGSTI NQDMMQLVWQ HVETITV
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