| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1293 |
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| Symbol | |
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| ID | 3908166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1475132 |
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| End bp | 1476454 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883187 |
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| Product | TRAP dicarboxylate transporter DctM subunit |
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| Protein accession | YP_484914 |
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| Protein GI | 86748418 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.613437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGTCG AACTCCTGAC CCTGCTGTTC TTCGGTTCGC TGCTGTTCTT CCTGTTCATC
GGCACGCCGC TGGCGTTCAC GCTCGGCGGC ATTTCCGTGG TGTTTCTGTA TTTCACCATG
GGGCCGGTCG GCTTCTACAT CGTCGCGTCG AAATTCTGGG ACTCGATGAC CAGCTTCACG
CTGATCGCGA TCCCGATGTA CGTGTACATG GCGATGTTGC TCGAGAAATC GGGCGTGGCG
CAGGACCTGT ACCGGATGAT GCACGTCTGG TTCGGCGCGA TGCGCGGCGG GCTGGCGATC
GGCACGGTGC TGATCTGCGC GATCTTCGCG GCGATGAGCG GCATCAGCGG CGCCGCCGTG
GTCACCATGG GCGCCATCGC GTTGCCGCGG ATGCTCGAGC GCGGTTACGA CAAGCGGCTC
GCGCTCGGCG CGATCAATGC CGGCGGCGGC TGGGGCGTGC TGATCCCGCC GTCGATCCTG
ATGGTGCTCT ACGCGCTGCT GACCGAAGTG TCGGTCGGCC GCCTGTTCGC CTCCGGCATC
GGTCCCGGCA TTCTGCTCGT CGTGCTGGTG ACGATCTACA TCACCGTCCG CGCCTGGCTG
CAGCCGTCGC TGGCGCCGGC GCTGCCGGTC GAGGAGCGCG GCGACTGGGG GCTGAAATTC
GCGTCGCTGA AGGCCGTCGT GCTGCCGCTG CTGATCGTGG TGATGGTGCT CGGCGCGATC
TTCGGCGGCT TCGCGACGCC GACCGAAGCC GCGGCGCTCG GCGTGTTCGG CGCGCTGGTC
GCCTCCGCGG TGCATCGCAA GCTGACGCTG GAGGTGCTGA CCGACGCCGC GATGCAGACG
CTGCGCCTCA CCGCGCTGAT CATGTGGATC CTGTTCGCCG CGCACGCGTT CTCGACGGCC
TACACCACGC TCGGCGCCAA CGAACTGATG AACCATCTGA TGACGCTGAT TCCCGGCGGC
GAGTGGGGCG CGCTGGCCTT CATCCTGCTC GTGCTGCTGC TGCTCGGCAT GGTGCTGGAT
CCGGTCGGCA TCATGCTGAT CACGCTCCCG GTGTTCATCC CCGTGGTGCA GCTCTACGGC
TGGGACCCGG TCTGGTTCGG CGTCGTCTTC ATCATCATGA TGGAGATCGG CTACATGACG
CCGCCGTTCG GCTTCAACCT GTTCTACCTC AAGGCGGTGG CGCCGCCCGA GGTCAGCATG
AGCGACATCT ACTGGTCGGT CGTGCCGTAT GTGCTGGTGA CGCTGCTGGG CGTGCTGATC
CTGATCATCT TCCCGCAGAT CGCGCTGTTC TTCCCGAATC TGTTCTTCGG CGTTGCACGC
TAG
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| Protein sequence | MSVELLTLLF FGSLLFFLFI GTPLAFTLGG ISVVFLYFTM GPVGFYIVAS KFWDSMTSFT
LIAIPMYVYM AMLLEKSGVA QDLYRMMHVW FGAMRGGLAI GTVLICAIFA AMSGISGAAV
VTMGAIALPR MLERGYDKRL ALGAINAGGG WGVLIPPSIL MVLYALLTEV SVGRLFASGI
GPGILLVVLV TIYITVRAWL QPSLAPALPV EERGDWGLKF ASLKAVVLPL LIVVMVLGAI
FGGFATPTEA AALGVFGALV ASAVHRKLTL EVLTDAAMQT LRLTALIMWI LFAAHAFSTA
YTTLGANELM NHLMTLIPGG EWGALAFILL VLLLLGMVLD PVGIMLITLP VFIPVVQLYG
WDPVWFGVVF IIMMEIGYMT PPFGFNLFYL KAVAPPEVSM SDIYWSVVPY VLVTLLGVLI
LIIFPQIALF FPNLFFGVAR
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