Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1272 |
Symbol | fliF |
ID | 3908145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 1458328 |
End bp | 1459926 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637883166 |
Product | flagellar MS-ring protein |
Protein accession | YP_484893 |
Protein GI | 86748397 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000378845 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.795293 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGCAGAGTT TGCTGGGTTT CCTGAAAGGC TTGGGCGCCG CCCGGGTGAT GGCCATGATC GCCGTCACCA TGGCGCTGCT CGGCTTTTTC GCCTTCGTCA TCATGCGCGT GTCGCAGCCG CAGATGACGA CCCTCTATAC CGACCTCAGC GTCGAGGACT CCTCCAGCAT CATCAAGGAG CTGGAGCGCC AGGCGATCCC GTTCGAAATG CGCAATGACG GCGCCATTCT GATGGTGCCG AAAGACAAGG TGACCCGGCT GCGGATGAAG CTGGCCGAGG GCGGACTGCC GAAGGGCGGC GGCGTCGGCT ACGAGATCTT CGACAAATCC GACGCGCTCG GCACCACCAG CTTCGTCCAG AACATCAACC ATCTCCGCGC GCTGGAAGGC GAATTGTCCC GCACCATCCG GGCGATCGAC CGGGTTCAGG CGGCGCGGGT GCATCTGGTG CTGCCGGAGC GGCCGTTGTT CTCGCGCGAG ACGCCGGAGC CGTCGGCGTC GATCGTGCTG AGGGTGCGCG GCGCGCTGGA GCCGCAGCAG GTCCGCGCCA TCCGCCATCT GGTCGCCTCC GCGGTCAACG GCCTGAAGCC GCAGCGGGTC TCGATCGTCG ACGAGGGCGG CCAGTTGCTC GCCGACGGCT CGGCCAGCGC CAATGCCGCC GACGGCGCCG CCGGCGACGA ACGCCGCACC AGCTTCGAGA AGCGGATGCG CAACGAGATC GAGGGCATCG TGTCCTCGGT CGTCGGCTCC GGCCGCGCCC GGGTCCAGGT CACCGCCGAT TTCGATTACA ACAAGATCAC CCAGACTTCG GACAAGTTCG ACCCCGAAGG CCGGGTGCTG CGCTCCAGCC AGACCCGCGA AGAGCAGGCG CAGACCTCCG CGGCCGACGG CCAGGTCACC GTCAACAACG AACTGCCGGG CAATCAGGCC CCGGGCGGCG CCGGCGCGCG GGACCAGAGC AAGAAGTCCG AGGAGACCAA CAATTACGAA ATCTCCCGCG TCACCAAGAC CGAGGTGACC GAGGCCGGCC GGGTCAACCG GCTGTCGGTC GCGGTGCTGG TCGACGGCAG TTACACCAAA GACGAGAAGG GCGAGCTGGT CTACGCCGAG CGGCCGAAGG AGCAGCTCGA CCGCATCGCC GCGCTGGTGC GCTCGGCGAT CGGCTTCGAC CAGAAGCGCG GCGACCAGAT CGAGGTCGTC AATCTGAGAT TCGCGGAGGC GCCGCAGGTC GAGAAACTGC CGGAGCCCGC CGGCCTGCTC GGCATGCTGC AATTCACCAA GGACGACATC ATGAACATGA TTCAGCTCGG CGTGATGTTC GTGCTCGGCC TGGTGGTGCT GTTCATGGTG ATCCGCCCGC TGGTCAAGCG CGTGCTCGCC TCCGACCCGG CGTCCGAAGC CAGCGGCCTG CCGGCGCTGG CCGACGGCAG CCTGCCGCAA ATCGGCTCCG ACGGGCAGGC CGGCACCAGC ATGATCGACA TCGCCCAGGT GCAGGGCCAG GTTCACGCCC AGTCGGTCCA CCGCGTCGGC GAACTCGCCG AGCGCAATCC CAACGAAACC GCAGCCATTG TCCGTCAATG GCTGGCCGAG CCGGCATAA
|
Protein sequence | MQSLLGFLKG LGAARVMAMI AVTMALLGFF AFVIMRVSQP QMTTLYTDLS VEDSSSIIKE LERQAIPFEM RNDGAILMVP KDKVTRLRMK LAEGGLPKGG GVGYEIFDKS DALGTTSFVQ NINHLRALEG ELSRTIRAID RVQAARVHLV LPERPLFSRE TPEPSASIVL RVRGALEPQQ VRAIRHLVAS AVNGLKPQRV SIVDEGGQLL ADGSASANAA DGAAGDERRT SFEKRMRNEI EGIVSSVVGS GRARVQVTAD FDYNKITQTS DKFDPEGRVL RSSQTREEQA QTSAADGQVT VNNELPGNQA PGGAGARDQS KKSEETNNYE ISRVTKTEVT EAGRVNRLSV AVLVDGSYTK DEKGELVYAE RPKEQLDRIA ALVRSAIGFD QKRGDQIEVV NLRFAEAPQV EKLPEPAGLL GMLQFTKDDI MNMIQLGVMF VLGLVVLFMV IRPLVKRVLA SDPASEASGL PALADGSLPQ IGSDGQAGTS MIDIAQVQGQ VHAQSVHRVG ELAERNPNET AAIVRQWLAE PA
|
| |