| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1166 |
|---|
| Symbol | |
|---|
| ID | 3910101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1336848 |
|---|
| End bp | 1337879 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637883060 |
|---|
| Product | extensin-like protein |
|---|
| Protein accession | YP_484787 |
|---|
| Protein GI | 86748291 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.27994 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTCCGCG GCAAAGCGTC GACGCGCGCG GTGCTGATCG CGCTGGTTGT GCTCGGCGCG
TCGTCCGCGT GGGCGCAGGG TGAGATACCG TTGCCGAAGC CGCGCCCGGC CGAGGCGCCG
CAACTGCAGG GCGAACGCGC GGCGGACCGG CCCGAGGCCG ATGCGCCGCA GGCGGAAGCG
GCGCCGCCGC CGAAGCCGGA GCCGAAGCCG GAGCCGAAGC CGCCCTCGGC ATGCCGGCTG
GCGCTGACCG ACGCGATCGC GATCGCGCCG AGCCTTGCCG ACATTGCCGG CCCCGGCAGT
TGTGGCGGAA CCGATCTGGT GAAGCTCGAA GCGGTGGTGT TGCCGGACGG CAGCCGCGTG
CCGCTGACGC CGGCGGCGAC GTTGCGCTGC CCGATGGCCA GCGCGCTCGT CGACTGGGTT
CGCAGCGACC TCGCGCCGCT CGCCGCGTCG TTGGCCACGC GTCTCGCCGC GCTCGACAAT
TACGACTCCT ACGATTGCCG CGGTCGCAAC CGGGTGCGCG GGGCCAAGCT GTCGGAGCAC
GGCCGCGCCA ATGCGATCGA TCTGCGCGGC TTCAAGCTGG CCGATGGCCG CATGCTGTCG
CTGACCGACC GCGCCGCGCC GCGCGCGGTG CGCGAGAGCG TGCGGCAGTC GGTGTGCGAC
CGCTTCGCCA CCGTGCTCGG CCCGGGCTCG GACGGCTATC ACGAGGAGCA CGTCCACCTC
GATCTCGCCG AGCGTCGCGG CGGCTACAAG ATGTGTCAAT GGGAGGTGTG GGAGCCGCTG
CCCGTCATCG CGCCGCTGCT GCCGGCGGAG CGCCCGGCCG AAGCGCCGCC GCGCGAGGTG
GCGGCCGGCG AGCCACAGGA CCGCGACCCC AACCGCTCGC CGCAGCAGGC TCAGCCTGAG
AACGCGCCGC CGCAGCAGGT TGAGCCGGAG CAGGGCGAGC AAGCCGCCAA GCCAGAGCCG
CCGCCGGCGA GCAGCAAGGC GAAGAGAAAG CCGAAGAAGT CGCGGGGTGA GCGGCAGTCG
GAACTGCGGT AG
|
|---|
| Protein sequence | MFRGKASTRA VLIALVVLGA SSAWAQGEIP LPKPRPAEAP QLQGERAADR PEADAPQAEA
APPPKPEPKP EPKPPSACRL ALTDAIAIAP SLADIAGPGS CGGTDLVKLE AVVLPDGSRV
PLTPAATLRC PMASALVDWV RSDLAPLAAS LATRLAALDN YDSYDCRGRN RVRGAKLSEH
GRANAIDLRG FKLADGRMLS LTDRAAPRAV RESVRQSVCD RFATVLGPGS DGYHEEHVHL
DLAERRGGYK MCQWEVWEPL PVIAPLLPAE RPAEAPPREV AAGEPQDRDP NRSPQQAQPE
NAPPQQVEPE QGEQAAKPEP PPASSKAKRK PKKSRGERQS ELR
|
|---|
| |