| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1102 |
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| Symbol | |
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| ID | 3910188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1265108 |
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| End bp | 1266520 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637882995 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_484723 |
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| Protein GI | 86748227 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.680161 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGCGCA CTGCTCTCGC GAGCCTGGCC GTCGCCGCTT TGGCGGCTGC GGGAGGCGGC
CTGTACGGTG TCCGCGAGCA CCTTCATGCG AGCACCGCGC AGGGCATCGC GTTGTTTGCT
CCGGCGCAGG CGCAAAGCAA TGACGAGCCG ATCTACTATC AGGATCCGGA CGGCAAGCCG
TCCTATTCGC TGACACCGCG CAAGACCGCC GACGGGCGCG ACTATCGCGC CGTGCCGGCC
GGCGCCGATC TGAATTTCGG CGACGACGCG CCCGTCGCGC CGCCGATGGT GGTTGCGACG
GATCGCAAGA TCAAATTCTA TCGCAATCCG ATGGGCCTCG CCGACACCTC GCCGGTGCCG
AAGAAGGATT CGATGGGGAT GGACTACATC CCGGTCTACG AGGTCGACGG CAGCGACGAT
GGATCGGTGA AATTGTCGCC AGGGAAGATT CAGCGCACCG GTGTCAAATC GGAAGCCGCC
GGCCGGCGCG TGATCCGCAC CACGATCCGC GCGCCGGGCG TGATCCAGCT CGACGAACGC
CGAGTCTCGG TGATCGCGAT GCGCTCGGAA AGCTTCGTGC AGAAGATCGC CGACGTCACC
ACCGGCAGCC GCGTCACCAA GGACCAGGCC TTGATGGAGG TCTACAGCTC CGCGATCTCG
GCTGCGGCGG CCGACTATAT CGCCACCATC AATTCGAAGA CCACCGGCGG CGTCGCTGCC
TATGGGCGTG GCTCGCGGCA GCGGCTGATG AATCTCGATG TGCCGGACGC TGCGATTGCC
TCGATGGAAA AGGCCGGCAC GGTGCCGATC GCGCTGGAAT GGACGGCGCC GCGCGACGGC
GTCGTGCTGG AACGCAACGC CATCGAGGGC ATGCGGGCGC AGCCCGGCGA TGTGTTGTTC
CGGATCGCCG ATACATCCGT GGTGTGGGCG ACGCTCGACG TGTCCGAGCG CGATCTCGGC
GCGCTGGCGC CGGGCCAGCC CGTGGTCGTT CGCGCCCGCA GCTATCCAGG GCGCGACTTC
ACCGGCGAGG TGAAACTGAT CTATCCGCAG ATCGGCAAGG AGACGCGCAC GGCGCGCGTC
CGGGTCGAAC TGGCCAATGC CGATCTGGTT TTGCTACCCG ACATGTATGT CGATGCCGAG
ATCGACACCG GCGGCTCTCA GCCGGTGCTG GCGGTGCCGG ACAGCTCCAT ACTGGATTCC
GGCAGCAAGC AGGTGGTGTT CGTCGACCAG GGCGAAGGGC GCTACCAGCC GCGGAGCGTC
AAACCCGGCC GTCGCGGAGG GGATGACGTC GAAATCCGCG AAGGTCTGGC CGAAGGCGAG
CGGGTCGTGG TGTCGGCCAA CTTCCTGATC GACGCGGAGA GCAATTTGAA TGCCGCGCTG
AAGAGCTTCT CGGACGCCGG AGCCAAGCCA TGA
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| Protein sequence | MTRTALASLA VAALAAAGGG LYGVREHLHA STAQGIALFA PAQAQSNDEP IYYQDPDGKP
SYSLTPRKTA DGRDYRAVPA GADLNFGDDA PVAPPMVVAT DRKIKFYRNP MGLADTSPVP
KKDSMGMDYI PVYEVDGSDD GSVKLSPGKI QRTGVKSEAA GRRVIRTTIR APGVIQLDER
RVSVIAMRSE SFVQKIADVT TGSRVTKDQA LMEVYSSAIS AAAADYIATI NSKTTGGVAA
YGRGSRQRLM NLDVPDAAIA SMEKAGTVPI ALEWTAPRDG VVLERNAIEG MRAQPGDVLF
RIADTSVVWA TLDVSERDLG ALAPGQPVVV RARSYPGRDF TGEVKLIYPQ IGKETRTARV
RVELANADLV LLPDMYVDAE IDTGGSQPVL AVPDSSILDS GSKQVVFVDQ GEGRYQPRSV
KPGRRGGDDV EIREGLAEGE RVVVSANFLI DAESNLNAAL KSFSDAGAKP
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