Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1008 |
Symbol | |
ID | 3909132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 1154444 |
End bp | 1156507 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637882901 |
Product | lipopolysaccharide biosynthesis |
Protein accession | YP_484629 |
Protein GI | 86748133 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.597439 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCCCA GGCCGTCTTC CCAAACGATC TCCGACGACC GCAATCCCGA CGGGATCGAT TTCAGGAACG TCGCCGGCAT TCTGGCGCGG CGCAAGACCT GGGTGTTCGG CGTTCCGCTG GCGCTGTGCG CGGTGGTCCT GGCCTATCTC CTGGTCGCGC AGCCGTCCTA CACCGGATGG GCGCAGGTGT TCGTCGATCC GCGCGATCAG TACACGCCGA AGGACGACCC GCTGCAGAAT TCGGTGCCGG GCGACGGCCT GCTGCTGGTC GAGAGCCAGC TCAAGATCAT CACCTCGAAC GAGGTGCTGA ACCGCGTCAT CGAGCAGATG AATCTGCAGA ACGATCCGGA GTTCAACGGC GAGCGGATGG GGCTCGGCCG GCTGGTGAAG GCGCTGATCG GGCTCGGCAA GACCGAGGAC CGCGCCCTCG TCACGCTGCG CAATCTGCGC AAGAAGGTCG CCACCAAGCG GGTCGACCGC TCCTTCGTGA TCGACATCAT GGCCTCGGCC GACACCGCGC CGCGCGCGGC CGCGCTCGCC AATGCGGTGG CGACCGCCTA TCTCGACGAG CAGGCCGGCG CCAACGCCGC GTTTCAGCGC CGAACCTCGG AAGCGATCTC GGCGCAGCTC GGCAAGCTGC GGCAGGAGGT CAAGCGCGGC GAGGAAGCCG TCGCCGCCTA CAAGGCGGCC AACAATCTGG TCGGCGCGCG CAGCCGGATG GTGAGCGAGC AGCAGCTCGA CGAAGCCAAC ACCCAGCTCA CCAACGCCAA GACCCGGCTG GCCGATGCGC AGGCGCGGGT CCGGCTGATC GAAACCATCG AGCACGGCGA CGCCGGCCTC GAGGCGGTGC CCGAGGCGAT GCAGTCGGCC GCGATCGTGC AGTTGCGCGG GCGGCTGGCC GACGCGTCGC GCGAGGAGGC GCAACTCGCG CAGATCGACG GCCCCAATCA TCCGGCGCTG CAGGGCGCGC GGGCGCAGGT GCGTGACGTT CAGGCCGCGA TCCAGCGCGA GCTGAAGACG ATCGCGCGCT CGGTGCGCAA CACCTACGCC AGCGAACGCA CCAATGTGCA GACCCTGCAG GCCAATTTCG ACGCTCTGAA GACGCAGTCG CAGGCCAACG AGAAACTGCT GGTGCCGCTG CGCGAGCTGG AGCGCAAGGC GGAATCCAGC CGCATCGTCT ACGAGAACTT CCTCGCCAAG GCGAAGACCG CCGAGGAGCG GCAGGGCATC GACACCACCA ACATCCGGCT GATCTCGCGC GCCACCACGC CGGAAAACAA GAGCTGGCCG CCGACGCTGA TCATGCTGGC CGCCGCGATC TTCGCCGGGC TGACCATCGG CATCGCGCTG GCGCTGGCGC GCGATCACTT CGAGCGCCCG GACCGTGGAC CCGAGCCGGA GGCCGTCGAC GAAGTCGATC CTCCCGTCGC GGTCGCGGTC GCGCCCGTCC CGGCGCCGCG GCCGGTGATG GCGCAGCCCC GCACCGGCCG GCTGAAGGCG CTGAGCGCGG ACCTGCTCGC GGCGCCGAAG GGCCACACCA TCGTGCTGGT CCAGGTGCAA CGCGCCGCGT GGCTCGACGA CGTCGCGCTG CAACTCGCGC GGACCGTGAT CGCCGCCGAG ATGGACGTGA TGCTGGTCGA CGCCGATCTG GCGCGGCATC ACACCACGTC GCGGCTCGGC TTCGACGGTG CGCCCGGCCT GCGTGACGTG ATGGCCGGAA CCGCCGCGAT CAACGAGGTC GTGAAGTTGC ACCAGCCGAC CGCGATGCGG ATCGTGCCGG TCGGGCTGTC GGCCGTCGGC AATCGCGATC CGCGCGCCCG GCAGGCGCTG CAGTCGGCGG TGCAGCAGCT GCGCGCGTTC GACCGCGTCA TCGTCGACGG CGGCGAGATC GGATCGACCG CGTCCGAATT CGGGCTGTAC TACATGGCCG ACGAAGTCGT GTTCCTGGCG CAGGGCCCCG GCGGCAAGAG CGAGGACGCC GCCATCCTGG TCGATCTGCT GCAATTGCGT CAGGTCAAGG CGCGGATCGT GTTCGTCGAG CCGGACGTCG CGGTGGCGGC ATGA
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Protein sequence | MSPRPSSQTI SDDRNPDGID FRNVAGILAR RKTWVFGVPL ALCAVVLAYL LVAQPSYTGW AQVFVDPRDQ YTPKDDPLQN SVPGDGLLLV ESQLKIITSN EVLNRVIEQM NLQNDPEFNG ERMGLGRLVK ALIGLGKTED RALVTLRNLR KKVATKRVDR SFVIDIMASA DTAPRAAALA NAVATAYLDE QAGANAAFQR RTSEAISAQL GKLRQEVKRG EEAVAAYKAA NNLVGARSRM VSEQQLDEAN TQLTNAKTRL ADAQARVRLI ETIEHGDAGL EAVPEAMQSA AIVQLRGRLA DASREEAQLA QIDGPNHPAL QGARAQVRDV QAAIQRELKT IARSVRNTYA SERTNVQTLQ ANFDALKTQS QANEKLLVPL RELERKAESS RIVYENFLAK AKTAEERQGI DTTNIRLISR ATTPENKSWP PTLIMLAAAI FAGLTIGIAL ALARDHFERP DRGPEPEAVD EVDPPVAVAV APVPAPRPVM AQPRTGRLKA LSADLLAAPK GHTIVLVQVQ RAAWLDDVAL QLARTVIAAE MDVMLVDADL ARHHTTSRLG FDGAPGLRDV MAGTAAINEV VKLHQPTAMR IVPVGLSAVG NRDPRARQAL QSAVQQLRAF DRVIVDGGEI GSTASEFGLY YMADEVVFLA QGPGGKSEDA AILVDLLQLR QVKARIVFVE PDVAVAA
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