| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0938 |
|---|
| Symbol | |
|---|
| ID | 3909792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1085083 |
|---|
| End bp | 1085580 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637882831 |
|---|
| Product | MarR family transcriptional regulator |
|---|
| Protein accession | YP_484559 |
|---|
| Protein GI | 86748063 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00631452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAT CGCAGCATCT GATTCATTCA AGTCGAACGA TAAAGTCTCA GCCCGTGGCC
AGATCGCCCA GTTCCAACCC GCCGATCACC GAGCATCTCG CTTATCTGCT GGCGCAGGCC
AACCGGGAGA TCAACCGTCA GCTCGAGGCA CGGCTGCGCG ACGAAGGCGT TCCGGTCGAG
CAATGGCGCA TCCTCAAGGT CCTGTCCGAC GGCAAGGGCC ATTCGATGGG CGACCTCGCC
GAGGAAGTGC TGCTCAACCA CCCGACCCTG ACCAAGATGA TCGACCGCAT GGTGTCGGAC
TCGCTGGTGT ATCGCGTGCA GGCCCCGGAC GATCGTCGCA AGGTGCTGAT GTATTCGTCC
GAACGCGGCA AGGCCCTGAC CCAACGTCTC AACGCGCTCG CGCTCAGCCA GGAAGCGCAT
ATCGCCGAGA ACTACGGCGA CAAGGCCACC GCCGAACTGA AGCGGCTGCT GGAGAGCCTG
ATCGACACCG CGACCTGA
|
|---|
| Protein sequence | MQQSQHLIHS SRTIKSQPVA RSPSSNPPIT EHLAYLLAQA NREINRQLEA RLRDEGVPVE
QWRILKVLSD GKGHSMGDLA EEVLLNHPTL TKMIDRMVSD SLVYRVQAPD DRRKVLMYSS
ERGKALTQRL NALALSQEAH IAENYGDKAT AELKRLLESL IDTAT
|
|---|
| |