| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0712 |
|---|
| Symbol | |
|---|
| ID | 3908218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 798005 |
|---|
| End bp | 800488 |
|---|
| Gene Length | 2484 bp |
|---|
| Protein Length | 827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637882604 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_484334 |
|---|
| Protein GI | 86747838 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGACC TGAAGAGATC GATGACGCCG GATTTCCTCG CCCGCGGCGG CGAGATGGGC
GCTCTGATGC GCGCCCATGA CTGGGCGGAT TCGACGCTCG GGCCGGCGGA GACATGGCCG
CAGAGCCTGC GCACCGCGCT GCGGATTCTG CTCAACAGCA ACCATCCGAT GTTCATCTGG
TGGGGCCCCG ATCTGATCCA GTTCTACAAC GACGCCTACC GGCAGACGAT GGGACCGGAG
CGCCATCCCG GCGCACTCGG CCAGCGCGGG CGCGACTGCT GGGCGGAGAT CTGGGACATC
ATCGGCCCGC AGATCGAGCA GGTGATGAGC GGCGGCGGAT CGACCTGGCA CGAAAATCAT
CTGGTGCCGG TGACGCGCAA CGGCCGCCGC GAGGACGTCT ACTGGACCTA CGGCTTCAGC
CCGATCGATC AGGACGATTC GGTCGGCGGC GTGCTGGTGG TGTGTCGCGA CGTGACGCGA
GACGTATCGG CATCGATGGC GCTGCGCGAA CGCGAGGCCG AGCTGGCGCG CGTGCAGCAA
ATCGGACGGA TCGGCGGGCT CGAGGTCGAT CTGCGGTCCG GCTTCCGCAA CCGGCGTTCG
CCGGAATATC TCCTGGTCCA CGGTCTGCCG CCCGAGGCCG CGACGGAAAC CCACGAAGAC
TGGGTTCGAC GCATTCATCC CGAGGATCGC GAGGCGACCG AACGGCAATT CGTCGAGGCG
GTGAACGGCG ACGCCCGCGA CTACGTCGCC CGCTATCGGA TCATCCGTCC GAGCGACGGC
GAAACGCGTT GGATCTCGGT GCGTGCGGTG ATCGAGCGCG ACGACAGCGG CACGCCGCTC
CGGCTCGTCG GCGCGCATAT CGACGTCACC GAACAGGTCG AGGCCGAGCA GAAGGCGCAG
GCGAGCGAGG AAGCGGCGCG CAAACTCGCC GCACAGCTCG CGCAACTGAA CACAACGCTC
GCGCAACACG TCGAGGAAAA AACCCGCGAG CGCGACCGGA TCTGGAATGT GTCGCAGGAC
CTGCTGCTGG TTGCCGACCG CCGCGGCGTC TGGCGCACGG TGAATCCGGC CTGGACCAAT
ACGCTGGGCT GGAGCGAGGC CGAGCTGTTG AACAACACCT CGGAATGGAT CGAGCACCCG
GCCGATGGCG GCATTACACG GGCGCAGTTG GCCGAGCTGT GCGCGGGCGC CGGCACGGTG
CGCTTCGAGA GCCGGATCCG CGCCAAGGAC GGATCGTATC GCTGGTTGTC CTGGACCGGC
GTCTCCGACG CCGACGCCTG CTACGCGGTC GCGCGCGACA TCACCGCCGA CAAGGCGGCG
GCGGAGCGCC TCAAGGTCAC CGAGGAGGCG CTCCGTCAAT CGCAGAAGAT GGAGGCGGTC
GGGCAACTCA CCGGGGGTAT CGCCCACGAT TTCAACAATC TGCTGACCGG CATCGTCGGT
TCGCTCGAGC TGATGCGGAC CCGGCTCGAG CAGGGCCGCA CCGACAATAT CGCACGCTAT
ATCGACGCCG CGATGATCTC GGCGAATCGT GCGGCCGCGC TCACCCACCG GTTGCTCGCC
TTCGCCAGGC GTCAGCCGTT GGTACCGAAG CCGGTCGACG CCAATCACCT CGTGGTCTCG
CTCGAGGATC TGCTGCGCCG GACGATCGGC GAAGCGATCG AGTTCGAGAT CGCTGCGGCG
CCGGATCTGT GGCTCACGCT GTGCGATCCC AACCAGCTCG AAAGCGCGCT GCTCAATCTG
GCGATCAACG CCCGCGACGC GATGCCGGAT GGCGGCCGGC TCACGATCAC CACGCGCAAT
GCGACCTTCG ACGGCGGCGA GATGCCCGCG CTGCTGCCCG GCGACTATGT CTGCCTGACC
GTCTCCGACA CCGGCGTCGG CATGAACGAC GATGTCGCCG CGCGGGCATT CGAACCGTTC
TTCACGACCA AGCCGCTCGG CCGGGGCACC GGCCTCGGAC TGTCGATGAT CTATGGTTTC
GCGCAGCAAT CGCGCGGACA TGCGAGCATC GCCAGCGCGC GGTCCGAAGG CACCTCGGTC
ACGCTGTATC TGCCGCGCGA ACACGGCGAC GCAGGCGAGC GGCAGGAGCC GGCGAAGCCG
CCACGCGCGG ATGCTGCCCG CGGCGAGACC GTGCTGGTGG TCGAGGACGA GGCGGTGGTG
CGCGCGGTGA TCGTCGAGAT GCTGCGTGAC CAGGGTTATC GCGTGCTCGA GGCCGTGGAT
GGGCCATCCG GACTGGCGAT GCTGCAGGGC GACGAGCCGA TCGACCTGCT GCTGTCGGAT
ATCGGGCTGC CCGGCCTCAA TGGACGCCAG CTCGCCGACT ATGCGCGCCT CCACCGACCG
GACATCGGCG TGTTGCTGAT GACCGGCTAC GCCGAAAGCG CGGCGATGAC CGACGGCATT
CGCGAGGCCG GCATCGAACT GATCACCAAG CCGTTCGACC ACGGCGATCT GATGACACGC
GTGCGCGCGA TGGTTGCCGA TTAG
|
|---|
| Protein sequence | MLDLKRSMTP DFLARGGEMG ALMRAHDWAD STLGPAETWP QSLRTALRIL LNSNHPMFIW
WGPDLIQFYN DAYRQTMGPE RHPGALGQRG RDCWAEIWDI IGPQIEQVMS GGGSTWHENH
LVPVTRNGRR EDVYWTYGFS PIDQDDSVGG VLVVCRDVTR DVSASMALRE REAELARVQQ
IGRIGGLEVD LRSGFRNRRS PEYLLVHGLP PEAATETHED WVRRIHPEDR EATERQFVEA
VNGDARDYVA RYRIIRPSDG ETRWISVRAV IERDDSGTPL RLVGAHIDVT EQVEAEQKAQ
ASEEAARKLA AQLAQLNTTL AQHVEEKTRE RDRIWNVSQD LLLVADRRGV WRTVNPAWTN
TLGWSEAELL NNTSEWIEHP ADGGITRAQL AELCAGAGTV RFESRIRAKD GSYRWLSWTG
VSDADACYAV ARDITADKAA AERLKVTEEA LRQSQKMEAV GQLTGGIAHD FNNLLTGIVG
SLELMRTRLE QGRTDNIARY IDAAMISANR AAALTHRLLA FARRQPLVPK PVDANHLVVS
LEDLLRRTIG EAIEFEIAAA PDLWLTLCDP NQLESALLNL AINARDAMPD GGRLTITTRN
ATFDGGEMPA LLPGDYVCLT VSDTGVGMND DVAARAFEPF FTTKPLGRGT GLGLSMIYGF
AQQSRGHASI ASARSEGTSV TLYLPREHGD AGERQEPAKP PRADAARGET VLVVEDEAVV
RAVIVEMLRD QGYRVLEAVD GPSGLAMLQG DEPIDLLLSD IGLPGLNGRQ LADYARLHRP
DIGVLLMTGY AESAAMTDGI REAGIELITK PFDHGDLMTR VRAMVAD
|
|---|
| |