Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_0673 |
Symbol | def |
ID | 3908600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 757821 |
End bp | 758348 |
Gene Length | 528 bp |
Protein Length | 175 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637882564 |
Product | peptide deformylase |
Protein accession | YP_484295 |
Protein GI | 86747799 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.478073 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCCTGC GCGAAATCAT CATCCTGCCG GACAAGCGGC TGCGTGAAAT CTCCAAGCCC GTCGCCGAGG TGACGCCGGA GATCCGCAAG CTCGCGGACG ACATGTTCGA GAGCATGTAC GAGGCGCCCG GCATCGGGCT GGCGGCGATT CAGATCGCCG AGCCGGTGCG GCTGATCACG ATGGACATCG TGCGCAAAGA GGGCAACGGC AAGAGCGATC CGCGGGCCTT CATCAATCCG GAGATCGTCG GCGCCTCGGC CGAGCTGAAC GTCTACGAGG AAGGCTGCCT GTCGATCCCG GAATACTACG CCGAGGTCGA GCGGCCCAAG ACGGTGCGGA TTCGTTACAC CGATCTCGAC GGTCAGGTGA AGGAAGAGGA CGCCGACGGC CTGTTCGCGA CCTGCATCCA GCACGAGATC GACCACCTCA ACGGCGTGCT GTTCGTCGAT CATATCTCGA AGCTGAAAAA GGCGATGGTC GTCCGCAAGT TCGAGAAGGC CGCCAAGCGC GGCATCAAAT ACGTCTGA
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Protein sequence | MALREIIILP DKRLREISKP VAEVTPEIRK LADDMFESMY EAPGIGLAAI QIAEPVRLIT MDIVRKEGNG KSDPRAFINP EIVGASAELN VYEEGCLSIP EYYAEVERPK TVRIRYTDLD GQVKEEDADG LFATCIQHEI DHLNGVLFVD HISKLKKAMV VRKFEKAAKR GIKYV
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