| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0560 |
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| Symbol | |
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| ID | 3909599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 630846 |
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| End bp | 631628 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637882448 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_484182 |
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| Protein GI | 86747686 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.139698 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0340576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACGA ACGGATTGAA TGTGATCGTG ACAGGCTCGG CCTCCGGCCT CGGCGCCGCG
ACGGCGAAGA TTCTGGCGCG CGACGGCGCC CGGCTCGTGA TCAACTATTC GTCCAGCCAG
GCCGACGCCG AGACGACCGC GGAGGAATGC CGCAAGCTCG GCGCCGCCGA GGTCGTGGTG
GTGCAGGGCG ACGTGTCGAA GGACGACGAC TGCAAGCGCA TCGTCGACGC CGCCGCGAAG
TGGGGCGGGC TCGACGCGCT GATCAACAAT GCCGGCATCA CCAAGCACGT CGCGCATCAT
CTGCTCGATC AATTGTCGGC GGAGGATTTC CAGCGGCTCT ACGCGGTCAA CACCATCGGC
CCGTATCAGA TGGTCCGCGC CGCGCGGTCG CTGCTGTCGG CCGGCGCCAA GGCGGCGGGC
CGGGCGTCGG CGGTGGTCAA CGTGTCGTCG GTCGCCGGCA TCAGCGGCGT CGGCTCGTCG
ATCGCCTATG CGGCCAGCAA GGGCGCGCTC AACACCATGA CGCTGTCGCT GTCGCGCGCG
CTGGCGCCTG CGATCCGCGT CAATGCGATC TGCCCGGGCT ATATCGACAC GCCGTGGTTC
ACCAAGGGCC GCGGCGCCGA GGAGGCCAAG CAGGTCCGCG ACATGGTGGT GGCGAAGGTG
CCGCTGAAGA TCGCGTCCAG CCCCGAGGAC ATCGCCGAGC TGGTGTGTTT TCTGGCGACG
CCGAAATCCA ACAGCATGAC CGGCGAGATG GTGAGGATGG ACGCCGGGAT GCATCTCGGC
TGA
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| Protein sequence | MATNGLNVIV TGSASGLGAA TAKILARDGA RLVINYSSSQ ADAETTAEEC RKLGAAEVVV
VQGDVSKDDD CKRIVDAAAK WGGLDALINN AGITKHVAHH LLDQLSAEDF QRLYAVNTIG
PYQMVRAARS LLSAGAKAAG RASAVVNVSS VAGISGVGSS IAYAASKGAL NTMTLSLSRA
LAPAIRVNAI CPGYIDTPWF TKGRGAEEAK QVRDMVVAKV PLKIASSPED IAELVCFLAT
PKSNSMTGEM VRMDAGMHLG
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