| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0408 |
|---|
| Symbol | |
|---|
| ID | 3908846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 452026 |
|---|
| End bp | 452763 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637882294 |
|---|
| Product | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase |
|---|
| Protein accession | YP_484030 |
|---|
| Protein GI | 86747534 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0106] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase |
|---|
| TIGRFAM ID | [TIGR00007] phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.545772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.604429 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCTCT TCCCCGCGAT CGATCTCAAG AACGGCCAGT GCGTGCGGCT CGAACAGGGC
GACATGGCGC GCGCCACCGT GTTCAACCTC GATCCGACCG CGCAGGCGAA GAGCTTTGCG
GCGCAGGGTT TTCAGTATCT CCATGTGGTC GATCTCGACG GCGCCTTCGC CGGCAAGCCG
ATGAACGCAC AGGCCGTGGA ATCGATGCTG AAAGTCGTGT CGATGCCGGT CCAGCTCGGC
GGCGGCATCC GCGACCTCGC GACAGTCGAG GCCTGGCTGT CCAAAGGCAT CGCCCGCGTC
ATCATCGGCA CCGCGGCGGT GCGGGATCCG GCGCTGGTGA AGCAAGCTGC GAAGTCGTTC
CCCGGCCGCG TCGCGGTCGG CCTAGATGCC CGCGACGGCA AGGTTGCGGT CGAAGGCTGG
GCGGAGAGCT CGCAGGTCAC CGCGCTGGAA ATTGCGCAAC GCTTCGAAGA CGCCGGCGTC
GCCGCGATCA TCTTCACCGA CATTGCCCGC GACGGCCTGC TCAAGGGCAT CAACTGGGAT
GCGACGATCG CGCTCGCCGA GGCCATCAGT ATTCCGGTAA TCGCCTCCGG GGGGCTCGCC
TCGATCGAGG ATGTGAAGGC GATGCTGAGC CCGCGCGCTC ACAAACTGGA AGGCGCGATC
GCCGGCCGTG CGCTGTATGA CGGCCGGCTC GACCCGGCGG AAGCGCTGGC GCTGATCGGC
GCCGCCAGAG CGGCTTGA
|
|---|
| Protein sequence | MILFPAIDLK NGQCVRLEQG DMARATVFNL DPTAQAKSFA AQGFQYLHVV DLDGAFAGKP
MNAQAVESML KVVSMPVQLG GGIRDLATVE AWLSKGIARV IIGTAAVRDP ALVKQAAKSF
PGRVAVGLDA RDGKVAVEGW AESSQVTALE IAQRFEDAGV AAIIFTDIAR DGLLKGINWD
ATIALAEAIS IPVIASGGLA SIEDVKAMLS PRAHKLEGAI AGRALYDGRL DPAEALALIG
AARAA
|
|---|
| |