| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0197 |
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| Symbol | |
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| ID | 3909438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 221351 |
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| End bp | 222340 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637882078 |
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| Product | sigma 32 (RpoH) |
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| Protein accession | YP_483819 |
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| Protein GI | 86747323 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.271088 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCTCGG CATTTTCTTC GTCGTCCCTC GCCCCGGCAC ACTCCGACGC TGCGGTTTTC
GATGAGAAGA GCTACATGAG GGCGATCGGC CGCTATCCGG TCCTGGAGCC GGATGAAGAA
GCTCGGTTGT GGCAGCGATG GCTGCAGCAT CGCGACAAAG CGGCGGCTGA CGCGCTGATC
ACCAGCCACC TCCGGCTCGC CGCGAAACTG GCTCGCGACT TCCGACGCTA TGGCTTTCCG
CTGGGGGATC TGATCGCCGA AGCGAATCTC GGACTGATGA TGGCGCTCGA CCGGTTCGAC
CCCGAACGCG GCGCGCGGTT CTCGACCTGC GCGGTGTGGT GGATCCGGTC AGCGATCTAC
GATCACATCA TCCGATCGTG GTCGCTGGTG CGGATCGGCC GGACGCCTGC GCAGAAGAAG
TTGTTCTTCC GGCTTCGCGG CGAGATCCGC CGGCTCCAGC CCGATCACCA CGGCACGCTC
ACCAAGGAAT TGGCCGAACA GATTTCAGCG ACGCTCGACG TTCCGCTTCG CGAAGTCATC
GAGATGGAGC AGCGCCTGTC CGGCGACCGG TCCTTGAACA CGCCGTTGTC TGATCTCGAC
GAGAGCGGCG AGTGGCAGGA TCTGATTGCC GACGACGCGC CGAACGCCGA GGCGGTCCTC
GCCGGCCACG ACGAACTCGA CCATCAACGC CGCGCGTTGC AGGACGCGCT GGTTCAGCTC
GATGCCCGCG AACGCTACAT CTTTTCGGCC AGACATTTGG GCGAGCGTCC CGCCAGCTTC
GAGACGATCG GTCAGTCGCT CTCGATCTCG GCGGAACGGG TGCGGCAGAT CGAGGCCCGC
GCATTCGCCA AGGTCGCGAA CTCTGCCCGC CGAACGTGCG GGACGGCGCG GCCGGCCGCA
CGTGTCACCA GCAACCGAAA GACGACCGCT CTGACCGCTC CGCCCAACTG GATCGGCCAC
AACGCAGCCG CGGTCCACGC CTCGGTCTGA
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| Protein sequence | MTSAFSSSSL APAHSDAAVF DEKSYMRAIG RYPVLEPDEE ARLWQRWLQH RDKAAADALI
TSHLRLAAKL ARDFRRYGFP LGDLIAEANL GLMMALDRFD PERGARFSTC AVWWIRSAIY
DHIIRSWSLV RIGRTPAQKK LFFRLRGEIR RLQPDHHGTL TKELAEQISA TLDVPLREVI
EMEQRLSGDR SLNTPLSDLD ESGEWQDLIA DDAPNAEAVL AGHDELDHQR RALQDALVQL
DARERYIFSA RHLGERPASF ETIGQSLSIS AERVRQIEAR AFAKVANSAR RTCGTARPAA
RVTSNRKTTA LTAPPNWIGH NAAAVHASV
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