Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_0162 |
Symbol | |
ID | 3907767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 173463 |
End bp | 175799 |
Gene Length | 2337 bp |
Protein Length | 778 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637882044 |
Product | TonB-dependent iron siderophore receptor |
Protein accession | YP_483785 |
Protein GI | 86747289 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGGGGC TGAACTCGCG CATCCGTGCG CTGTTGCTAT CTGGATCCGT CGTCGCACTG GCGGTGGCGC CCGCTGCGGC GCAAACCGCG ACGACCTCGT CGCCACCGAA CCAGCAGAAG CAAGCCAAAC GGCAGCAGGC GGCGAAGCCA GCGGCGCAAC AGCAGGTGCA AACGCCTGCG CGCGATCCGC GCGACGCGCT GGCGCAGGCC GGGCAAGGCG TCCAGGCGCT CGACACCATC ACCGTGTCGG CGACGAAGAC TGAGGAGCGC GCGATCGACG CGCTGGCGCC GGCGAGCGCG ATCACCCAGG GGCAGATCGA GCGGCTGCAG CCGAACCGGC TGCAGGACAT TTTCGTCGCC ACCCCGGGCG TGGCGTTCCA GGACCGCGGC GACGATCCGT CCACCGCCAT CAACATCCGC GGCCTGCAGG ATTTCGGCCG GGTCGCCGTG GTGGTCGACG GCGCGCGGCA GAACTACCAG CGCTCCGGCC ACAATGCGCA GGGCTCGTTC TTTCTCGATC CCGAATTGAT CGGCGGCGTC GACGTGGTGC GCGGCCCCAG CGCCAACGTC TACGGTTCGG GCGCGATCGG CGGCGTGGTG TCGTTCCGCA CCAAGGACAT CGACGACGTG CTGCGTGCCG GCGAGCGCTG GGGCGTCGAC ATGACGGGGT CCTACGGCAG CAACAATGCG CGCGGGCTCG GCTCGATATT CGGCGGCGTC CGGGTCGATC CCACCGTCGA CGTGTTCGGC GGTGCGCTGT ATCGCACGCA AGGCAACTAC AAGGACGGCG CCGGCACCGA GATCGGCAAC ACCGGCAACG ACATCGCCGG CGGGCTGCTG AAGCTGACGG TGCGGCCGGC CGACGGCCAC GAGATCAAGT TCGGCGGCAT CTTCCAGGAC TACAATTACG ATATCGGCCA GTTCAATCGC GGCCCGGTGC TGACCGCGGC GCAGCGCGCG CTGTATCAGG GTTCGTCGGT CTACGAATCC AACGTGAAGA ACTACACCGG AACGATGAGC TGGAAGTATT CGCGGCCGGA CGACATGCTG TTCGACTGGA ACATCAGCCT GTACGGCAAC CGCACCGACA ACGATCAGAC CAAGACCTAT CACAACTCCA CCAGCGGCGC GGCCTATTGC GGCACCGGCA ATGTCGGCAA CAACATCTCG GGTTGCGTCG GCGACCAGCG CGGCTACCGG CTGGATACGA TCGGCATCGA CGCCAACAAC ACCACGCGGT TCGATTACGG CGACTGGCGC ACCGCCGTCA CCTACGGCTT CGATGTCTTC AACGACAAGG TCACGACCTG GGATTCGCGC GGCAATTCCA ACATCACCAC CCCGAGCGGC GAGCGCACCG TGTCCGGCGG CTTCATCCAG CTCAAGAACA ACTACGCGAG CTGGCTCGAG GTGATCGGCG CGGCGCGGTA CGACCATTAC GAGCTCAGTT CGGAGACCAG CTCGGCGAGC GGCAGCCGGC TGTCGCCTAA GATCACCGTC GGCGTCACAC CGCTGGCGGG GCTGACGCCC TATGTCAGCT ACGCCGAAGG CTATCGCGCG CCGTCGATCA CCGAGACGCT GATCTCGGGC GCGCACGCCA CCGGCGGCGG CCCCGCGCTG TTCACCTGCG CGGACGGCAC CAGCGGCCTG TTCTGTCTGA TCCCGAACAC CGGGCTGCGG CCCGAAGTCG GCAAGAACAA GGAAGTCGGC ATCAATCTGA AATACAACGA CGTGTTCGTG TCGGGCGACA GCTTCCGCGG CAAGATCAAC GCCTTCCGCA ACGACGTCGA CGACTATATC GAGCTCGTCG CCTCGACGCC GCAGGCGACG ATCTACGGCA TGTACAGCAA GTATTATCAG TATCAGAACA TCCCGCACGC CCGCATCGAA GGCGTCGAGC TCGAGACCTC CTACGACGCC GGGCTGTGGT TCGTCGGCCT GTCGGCCTCG ACGCTGCGCG GCGTCAACAC CGACACCGGC CTCGGCCTCG CCTCGGTGCC GTCGCGCAAG GTCGTCACGT CGGGCGGCGT GCGCCTGCTC GACCGCAAGC TGACGATCGC TGCGCAATGG GCGTCGTACG CCGCCAACAC CAATCTGCCC GCCGGCTATC TGCCGGCGAC CTCCTACGAT CTGGTCAATC TCAACGTCGC CTATCGGCCG ACGGCGGACG TGACCTTGCA CTTCTCGGTC GATAATATCC TCAACAACTA CTATCGTCCG TATGCGATCC CCGGATCGTC GACCGATGGC ACGTCGCAGA ACGATGTTCT GTTCAGCAGT CCGGGAGCCG GCATCGTGTA CAAGGGCGGG ATCAAGGTGC ACTTCGGAGG TGCATAG
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Protein sequence | MVGLNSRIRA LLLSGSVVAL AVAPAAAQTA TTSSPPNQQK QAKRQQAAKP AAQQQVQTPA RDPRDALAQA GQGVQALDTI TVSATKTEER AIDALAPASA ITQGQIERLQ PNRLQDIFVA TPGVAFQDRG DDPSTAINIR GLQDFGRVAV VVDGARQNYQ RSGHNAQGSF FLDPELIGGV DVVRGPSANV YGSGAIGGVV SFRTKDIDDV LRAGERWGVD MTGSYGSNNA RGLGSIFGGV RVDPTVDVFG GALYRTQGNY KDGAGTEIGN TGNDIAGGLL KLTVRPADGH EIKFGGIFQD YNYDIGQFNR GPVLTAAQRA LYQGSSVYES NVKNYTGTMS WKYSRPDDML FDWNISLYGN RTDNDQTKTY HNSTSGAAYC GTGNVGNNIS GCVGDQRGYR LDTIGIDANN TTRFDYGDWR TAVTYGFDVF NDKVTTWDSR GNSNITTPSG ERTVSGGFIQ LKNNYASWLE VIGAARYDHY ELSSETSSAS GSRLSPKITV GVTPLAGLTP YVSYAEGYRA PSITETLISG AHATGGGPAL FTCADGTSGL FCLIPNTGLR PEVGKNKEVG INLKYNDVFV SGDSFRGKIN AFRNDVDDYI ELVASTPQAT IYGMYSKYYQ YQNIPHARIE GVELETSYDA GLWFVGLSAS TLRGVNTDTG LGLASVPSRK VVTSGGVRLL DRKLTIAAQW ASYAANTNLP AGYLPATSYD LVNLNVAYRP TADVTLHFSV DNILNNYYRP YAIPGSSTDG TSQNDVLFSS PGAGIVYKGG IKVHFGGA
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