Gene RPB_0047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0047 
SymbolpheT 
ID3908133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp46160 
End bp48568 
Gene Length2409 bp 
Protein Length802 aa 
Translation table11 
GC content69% 
IMG OID637881928 
Productphenylalanyl-tRNA synthetase subunit beta 
Protein accessionYP_483670 
Protein GI86747174 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0072] Phenylalanyl-tRNA synthetase beta subunit 
TIGRFAM ID[TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCA CCCTCTCCTG GCTGAAAGAC CATCTCGACA CCGACGAGCA GCTCGACGCG 
CTCGCCGACA AGCTCACCAT GATCGGGCTC GAGGTCGAGG GCATCGAAGA CAAGGCCAAG
GCGCTGGCGC CGTTCACCAT CGCCTTGGTG CTGACCGCCG AGAAGCATCC CAACGCCGAC
AAGCTGCAGG TCTGCAGCGT CGACACCGGC GCGGGCGCGC CCGTGCAGGT GGTGTGCGGC
GCCCCGAATG CGCGCGCCGG CCTCGTCACC GTGTTCGCGC CGCCCGGCAC CTTCATTCCG
GCCAAGGCCA TCACGCTGGG CATCGGCAAC ATCCGCGGCG TCGAGAGCCG CGGCATGCTG
TGCTCGGCCG CCGAGCTTGA GCTCTCCGAG GACCACGACG GCATCATCGA GCTGCCGGCG
GATGCGCCGA TCGGCCAGGG CTTTGCAGAA TGGGCCGGGC TCGGCGATCC GGTGCTCGAC
ATCAATCTGA CGCCGAACCG GCAGGACTGC GCCGGCATTT CCGGCATCGC CCGCGATCTC
GCCGCCGCCG GCATGGGCAA GTTCAAGAAC CCGTCGATCA AGCCGATCAA GGGCGACTTC
CCCTGCCCGG TGAAGGTCAG CGTCGAAGAC GACAAGCTCT GCCCCGGCTT CGCGCTGCGG
CTGGTGCGCG GCGTCAAGAA CGGCCCGTCG CCGGACTGGC TGCAGCAGCG GCTCACCGCG
ATCGGGCTGC GCCCGATCAA CGCGCTGGTC GACATCACCA ACTTCCTGAC CTTCGACCGC
TCGCGCCCGC TGCACGTGTT CGACGCCGCC AAGGTCTCGG GCGATCTCGT CGTGCGCCGC
GCCAAGGACG GCGAGACGCT GCTGGCGCTC GACGGCCGCA GCTACACGCT CGACCCCAAC
GTCTGCGTCA TCGCCGACGC CCACGGCGTC GAATCGCTCG CCGGCATCAT GGGCGGCGAA
GCCTCCGGCT GCTCCGACGA CACCACCGAC GTGCTGATCG AATCCGCGCT GTGGAACGAG
ATCAATATCG CGCAGTCCGG CCGCCGGCTC GGCATCAACA CCGACGCTCG CTATCGCTTC
GAACGCGGCG TCGATCCGGC CTTCATGGTG CCGGGGCTCG ACCTCGCGAC GCATCTGGTG
ATGCAATTCT GCGGCGGCAC GCCGTCGGAG GCCGTCGTGG TCGGCAAGGC GTTCGGCGAC
GACCGCATCA TCGATTTCCC GCTCAGCGAA GTGAAGCGGC TCGCCGGCAT CGAAGTGCCG
TTCGTGGAAG TGCGCCGGAT TCTCACGCAT CTCGGCTTCA TGGTGGCGGG CTCGGGCGCG
GTGGTGAAGG TCGCGGTGCC GTCGTGGCGC AGCGACGTCC ACGGCAAGGC CGACATCGTC
GAGGAAATCG TCCGCATCGT CGGCGTCGAC AAGGTGCCGA TGACGCCGTT CGAGCGCGGC
GACGCACCGC GCAAGCCGGT GCTGACCCAG ATCCAGACCC GCACCCGTCG CGCCAAGCGC
GCGCTGGCCG CGCGCGGCCT GACCGAGGCG GTGACTTGGT CGTTCATTTC CAAACCAAGC
GCCGAAGCCT TCGGCGGCGG CCAGCCCGAA TTGGCGCTGG CCAATCCGAT CGCCGCGGAT
CTCTCCGACA TGCGGCCGAG CCTGCTGCCT GGGCTGATCG CCGCCGCGCA GGCCAACGCC
GATCGCGGCA TCCCGGATCT GGCGCTGTTC GAGGTCGGGC AGATCTTCAA GGGCGACCGG
CCGCAGGATC AATTCATCGC GGCGAGCGGC GTGCGCCGCG GCGTCGCCTC CGCGCAGGGT
CTCGGCCGGC ACTGGTCGGG CTCGGCGCAA GCGAGCGCGC TCGACGCCAA GGCCGATGCC
TTCGCTGTGC TGGCGGCGGC CGGCGCGCCG ATGGCGGGGC TGCAGATCGC GACGAATAAA
TTGCCCGCCT GGCTGCATCC CGGCCGCTCC GGCGCGATCC AGATCGGGCC GCAGAATGTG
CTGGGCTATT TCGGCGAGCT GCATCCGCGC GTGCTCGAGC AGTTGCACGC CGACGGACCG
CTGGTGGCGT TCGAGGTGCT CCTCGACAAG ATCCCCGACG CCAAGCAGCG CCCGACCCGC
GCCAAGCCGG CGCTGGAATT GTCGGCGTTC CAGCCGGTGT CGCGCGACTT CGCCTTCATC
GTCGACCGCA AGGTCGCGGC TGCCGACCTG GTCCGTGCCG CGCAGGGCAT CGACAAGAAG
CTCATCACCT CGGTCGGCGT GTTCGACGTG TACGAGGGCA AGGGCATCGA TACCGACAAG
AAGTCGATCG CGATCGCGGT GACGCTGCAG CCGCGCGACA AGACCATGAC CGACCAGGAA
ATCGACGCAG TCGGCGCGAA GATCGTCGCC GAGGTGACGA AGAAGACCGG CGGCGTGCTG
CGCGGCTGA
 
Protein sequence
MKLTLSWLKD HLDTDEQLDA LADKLTMIGL EVEGIEDKAK ALAPFTIALV LTAEKHPNAD 
KLQVCSVDTG AGAPVQVVCG APNARAGLVT VFAPPGTFIP AKAITLGIGN IRGVESRGML
CSAAELELSE DHDGIIELPA DAPIGQGFAE WAGLGDPVLD INLTPNRQDC AGISGIARDL
AAAGMGKFKN PSIKPIKGDF PCPVKVSVED DKLCPGFALR LVRGVKNGPS PDWLQQRLTA
IGLRPINALV DITNFLTFDR SRPLHVFDAA KVSGDLVVRR AKDGETLLAL DGRSYTLDPN
VCVIADAHGV ESLAGIMGGE ASGCSDDTTD VLIESALWNE INIAQSGRRL GINTDARYRF
ERGVDPAFMV PGLDLATHLV MQFCGGTPSE AVVVGKAFGD DRIIDFPLSE VKRLAGIEVP
FVEVRRILTH LGFMVAGSGA VVKVAVPSWR SDVHGKADIV EEIVRIVGVD KVPMTPFERG
DAPRKPVLTQ IQTRTRRAKR ALAARGLTEA VTWSFISKPS AEAFGGGQPE LALANPIAAD
LSDMRPSLLP GLIAAAQANA DRGIPDLALF EVGQIFKGDR PQDQFIAASG VRRGVASAQG
LGRHWSGSAQ ASALDAKADA FAVLAAAGAP MAGLQIATNK LPAWLHPGRS GAIQIGPQNV
LGYFGELHPR VLEQLHADGP LVAFEVLLDK IPDAKQRPTR AKPALELSAF QPVSRDFAFI
VDRKVAAADL VRAAQGIDKK LITSVGVFDV YEGKGIDTDK KSIAIAVTLQ PRDKTMTDQE
IDAVGAKIVA EVTKKTGGVL RG