| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_5064 |
|---|
| Symbol | |
|---|
| ID | 3370622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 6007406 |
|---|
| End bp | 6008272 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637655439 |
|---|
| Product | helix-turn-helix protein RpiR:sugar isomerase (SIS) |
|---|
| Protein accession | YP_238129 |
|---|
| Protein GI | 66048288 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATCTGC TGCAACACAT CGCCCAGTCA CGTAATCTGC TGCGCAAATC GGAGCTCAAG
GTAGCTGACC ATGTGCTGCT CGACCCTGCG GCCGTGATGC ACAGTTCCAT GGCAGACCTG
GCGCACAGCG TCGGTATCAG TGAGCCGACC ATCGTGCGTT TTTGCCGGGC CATCGGCTGC
ACCGGGTTTC AGGACCTCAA GCTCAAGCTG GCGCAGAGCC TCGCGGCGGG CGCAAGTTTT
GGACAGTTCG CGATTCACGA AGACGATTCG GTTGCCGACT ACAGCCTGAA GATTTTCGAC
ACCACGCTGC ACACGCTCAT GGAAGTGCGC GAAAACCTCG ACCCCCATGC GTTGCAACTG
GCAGTCACGG CCATGGCCGG GGCCAATCGG GTCGAGTTCT ACGGGTTTGG CGCGTCCGGC
GCAGTGGCCG CTGATGCGCA GCACAAATTC TTTCGTCTAC TGCTGACCGC TGCGGCGTAT
TCCGATCCGC ACATGCAGGC GATGTCAGCT GTCACGCTCA AGCCGACGGA TGTCGCGGTG
TGCATTTCGC AGTCAGGTCG CTCGAAGGAT TTGCTGATCA CCGCCAATCT GGTCCGCGAG
AGCGGCGCGA CGCTGATCAC GCTGTGCCCC AGCCAGACGC CACTTGCCGA GCTGTCTTCG
GTCAATCTGG CCATCGATGT GCATGAAGAC ACCGAAATCT ACACGCCGCT GACTTCTCGC
ATCGCGCACT TGGTGGTCAT TGATGTGCTG GCGATGGGCG TCGCAATGGC CCGCGGCCCA
GGTCTGGTCA ACCACCTCAA GAGCGTCAAA CGCAGCCTGC GCGGCTTGCG CCTGTCACCG
AAGTCGATCA AGACCCACGA AGACTGA
|
|---|
| Protein sequence | MNLLQHIAQS RNLLRKSELK VADHVLLDPA AVMHSSMADL AHSVGISEPT IVRFCRAIGC
TGFQDLKLKL AQSLAAGASF GQFAIHEDDS VADYSLKIFD TTLHTLMEVR ENLDPHALQL
AVTAMAGANR VEFYGFGASG AVAADAQHKF FRLLLTAAAY SDPHMQAMSA VTLKPTDVAV
CISQSGRSKD LLITANLVRE SGATLITLCP SQTPLAELSS VNLAIDVHED TEIYTPLTSR
IAHLVVIDVL AMGVAMARGP GLVNHLKSVK RSLRGLRLSP KSIKTHED
|
|---|
| |