Gene Psyr_4954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4954 
Symbol 
ID3370506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp5871865 
End bp5873367 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content59% 
IMG OID637655323 
Producthypothetical protein 
Protein accessionYP_238019 
Protein GI66048178 
COG category[S] Function unknown 
COG ID[COG3517] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03355] type VI secretion protein, EvpB/VC_A0108 family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATA AGCAACCCGT GACTCAGCAG GACAGCGCTC TGGTTGAAGT GGAAAACTTC 
GCCCCGCAAT CTTCCTTGCT CGACAGCATC ATTTCCGAAA GCCGCGTTGC ACGCTCCGAA
ACCGAGCGCA CCCGTACCCG CGATCTGATC GGCGAACTGG TGGCCCAGGT ACTTGAAGGC
GAGATGACGC CGAGCAAGGA CCTGATTGCC GTGCTCGACG CGCGCATCGC CGAGATCGAT
TCGATGCTCT CCGAGCAAAT GAACGAAATC ATGCACGCCC GTGAATTCCA GCAGCTGGAA
GCATCCTGGC GCGGCCTGAA GTATCAGGTT GACCAGACCG AGACCAGCAC CACGCTGAAG
ATCCACCTGC TCAACGCGTC GAAAAAAGAC CTCGTGCGTG ACCTCAAGGC ATCGTCCGAA
TTCGACCAGA GCGCACTGTT CAAGAAGATC TACGAAGAAG AGTACGGCAC CTTCGGTGGT
GCGCCGTTCG GCATGCTGCT GGGTGACTAC GAGTTCAACC GCAGCCCGGA AGACATGTAC
CTGCTGGAAG AGATCTCCCA CGTGGCAGCT GCCGCCCACG CGCCGTTCAT TTCGGCTGCA
TCGGCTGAAC TGTTCGGCTG GGACTCGTTC ACCGACATGG CCGGCCCTCG CGACCTGGCG
AAGATCTTCG ACACCGTCGA ATACGCCAAG TGGAAGTCGT TCCGCGCCTC CGAAGACTCC
CGCTATGTCG GCCTGACCCT GCCGCACGTG CTGGGTCGCC TGCCGTATGG CCCGGATACC
ACGCCTGTCG AAGAATTCAA CTTCGTCGAA AGCGTCGATG GCCGTGACCA CAACAAATAC
CTGTGGATGA ACGCTGCCTA CGCGCTGGGC ACTCGTGTGA CCGACGCATT CTCCCGCTAC
GGCTGGTGCG TGGCGATCCG TGGTGTGGAA GGCGGTGGTC TGGTCGAAGG CCTGCCGACT
CATACCTTCA AGACCGATGA CGGTGAAATC GCGCTCAAAT GCCCGACTGA AATCGCCATC
ACCGACCGTC GCGAAAAAGA GCTCTCGGAC CTCGGCTTCA TTCCGCTGGT GCACTGCAAA
GGTACCGACT ACGCCGCGTT CTTCGGCACC CAGTCGACCC AGAAGCAGAA GCAGTACAAC
ACCGACATTG CCAACGCCAA CGCACGTCTG TCGGCGCAGC TGCAATACAT CTTCGCGACC
TCGCGTATCG CTCACTACAT GAAAGCGATC ATGCGCGACA AGATCGGCAG TTTTGCATCG
CGCAAGGATG TCGAGCTGTT CCTCAACAAG TGGCTGTCCA GCTACGTGTT GCTGGATGAC
ACCGCCAGCC AGGAAGCCAA GGCCAAGTTC CCGCTGCGCG AGGCGCGTGC CGAAGTGTTC
GAAGTCCCTG GCAAGCCTGG CGTCTACAAG GCCGTGACTT ACCTGCGTCC GCATTACCAA
CTGGATGAAC TGACGGCATC GCTGCGTCTG GTCGCCGAAT TGCCGCAATC GACACGCGGC
TAA
 
Protein sequence
MTDKQPVTQQ DSALVEVENF APQSSLLDSI ISESRVARSE TERTRTRDLI GELVAQVLEG 
EMTPSKDLIA VLDARIAEID SMLSEQMNEI MHAREFQQLE ASWRGLKYQV DQTETSTTLK
IHLLNASKKD LVRDLKASSE FDQSALFKKI YEEEYGTFGG APFGMLLGDY EFNRSPEDMY
LLEEISHVAA AAHAPFISAA SAELFGWDSF TDMAGPRDLA KIFDTVEYAK WKSFRASEDS
RYVGLTLPHV LGRLPYGPDT TPVEEFNFVE SVDGRDHNKY LWMNAAYALG TRVTDAFSRY
GWCVAIRGVE GGGLVEGLPT HTFKTDDGEI ALKCPTEIAI TDRREKELSD LGFIPLVHCK
GTDYAAFFGT QSTQKQKQYN TDIANANARL SAQLQYIFAT SRIAHYMKAI MRDKIGSFAS
RKDVELFLNK WLSSYVLLDD TASQEAKAKF PLREARAEVF EVPGKPGVYK AVTYLRPHYQ
LDELTASLRL VAELPQSTRG