Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4769 |
Symbol | |
ID | 3370319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 5645169 |
End bp | 5646581 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637655136 |
Product | major facilitator transporter |
Protein accession | YP_237834 |
Protein GI | 66047993 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0499845 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAACT CAGCAGCGCC GATCATGGAC GAAAAGACCC TGCGCTGGAT GCCCTGGGTC ATCGCCATCG CATTCTTCAT GCAAAGCCTG GACGGCACGA TTCTCAACAC CGCCTTGCCG TCCATGGCCC GCTCACTGGC AGAAGACCCG TTGCGCATGC AGTCGGTGGT CATCGCCTAC ATGCTGACCA TTGCGCTGCT GATCCCGGCC TCGGGCTGGA TCGCCGACCG GTTCGGGATC AAGCGCATCT TCTTCAGCGC CATCCTGCTG TTCAGCTTCG GATCATTGCT GTGCGCGCTG TCCTGGTCAC TGAACGTGCT GGTGGCCGCC CGGGTGATTC AGGGGCTGGG GGGCGCGCTG ATGCTGCCCA TCGGGCGCCT GATCGTATTG CGCGCCTATC CGCGCTCGGA GCTGGTGCGA ATCATGGGTT TTATCACCGT GCCGGGCCTT TTGGGCCCAT TGCTGGGCCC GACGCTTGGC GGCTGGATGG TGGAGTACCT GAGCTGGCAC TGGATTTTCC TGATCAACAT TCCGGTCGGC ATCCTCGGTT GCTATGCCGT CAAACACTTC ATCCCTGATC TTCCGGGAGG CGGTCGAACC CGGTTTGACG GCGTCGGCTT CATCCTGTTT GGCGCGGCGA TGATACTGAT CACCATTGCC CTGGAGGGCC TGGGCGAGCT GCACCTGCCA CACATGCGCG TGGTACTGCT GCTGTTTGCC GGAATGGGCT GTCTGGCAGC GTATTGGCTG CGTGCCGGGC ACATCGAATC GCCGTTGTTT GCCCCTTCAT TGTTCCGTAC CCGGACGTTT GCCGTCGGTA TCATGGGCAA CCTGTTCGCC CGCCTGGGCA GCGGCGCGCT GCCCTTCCTG GTGCCATTGC TGCTGCAAGT GGCCCTGGGG TATTCGCCGT CTCAGGCGGG TATGAGCATG TTGCCGCTGG CCGCCGCTGG CATGTTCGCC AAGACTGTCG CCCGCTGGCT GATCGAGCGG CTGGGCTATC GCGTGATTCT GACCGGCAAC ACACTGCTGC TGGGCATCCT GCTGGCCAGC CTGGCGCTGG TCGATGTGCA AACCCCATAC TGGGTGTTGC TGGTGCATCT GGGGCTGCTC GGCGCGGTCA ACTCCTTGCA GTTCACGGCG ATGAATACGG TCACCCTGAT CGATCTGGAC GATGCCAGTG CAGCGAGTGG CAACAGCCTG CTCTCGGTCG TGGCACAGCT GTCCCTGAGT CTTGGCGTGG CAAGCGCAGC AGCCTTGCTG GGTGGTTTCA GCGAAGAAGT AGCCACCGGC GAGGTCAGCA GCATGCTGGG GGCGTTCCAG ATGACCTTCC TGAGTGTCGG GGTGCTGGCC ATGTTTGCAG CAGGTATTTT CCTGCAATTG CCCGCGAAGG AGCCCAGGAT GGCCAAAGCC TGA
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Protein sequence | MQNSAAPIMD EKTLRWMPWV IAIAFFMQSL DGTILNTALP SMARSLAEDP LRMQSVVIAY MLTIALLIPA SGWIADRFGI KRIFFSAILL FSFGSLLCAL SWSLNVLVAA RVIQGLGGAL MLPIGRLIVL RAYPRSELVR IMGFITVPGL LGPLLGPTLG GWMVEYLSWH WIFLINIPVG ILGCYAVKHF IPDLPGGGRT RFDGVGFILF GAAMILITIA LEGLGELHLP HMRVVLLLFA GMGCLAAYWL RAGHIESPLF APSLFRTRTF AVGIMGNLFA RLGSGALPFL VPLLLQVALG YSPSQAGMSM LPLAAAGMFA KTVARWLIER LGYRVILTGN TLLLGILLAS LALVDVQTPY WVLLVHLGLL GAVNSLQFTA MNTVTLIDLD DASAASGNSL LSVVAQLSLS LGVASAAALL GGFSEEVATG EVSSMLGAFQ MTFLSVGVLA MFAAGIFLQL PAKEPRMAKA
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