| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4554 |
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| Symbol | |
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| ID | 3370094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 5408165 |
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| End bp | 5412364 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637654914 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_237622 |
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| Protein GI | 66047781 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0397479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAGACC TACTGAATTT GCTGAAAAAC CAGGGTCAAG TCGAAGAGTT CGACGCAATC
CGTATCGGAC TTGCATCGCC TGAGATGATC CGCTCTTGGT CGTTCGGTGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACGTTCAAG CCTGAGCGTG ACGGTCTGTT CTGCGCCAAG
ATCTTTGGCC CGGTAAAAGA TTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAGCAC
CGCGGTGTCA TCTGCGAAAA GTGCGGTGTT GAAGTAGCAC TGGCCAAGGT TCGTCGCGAG
CGCATGGCTC ACATCGAACT GGCTTCGCCG GTTGCCCACA TCTGGTTCCT GAAATCGCTG
CCGTCCCGTA TCGGTTTGCT GATGGACATG ACCCTGCGTG ATATCGAACG TGTTCTCTAC
TTCGAGAGCT ATGTCGTTAT CGATCCAGGC ATGACCACCC TTGAAAAAGG TCAGCTGCTG
AACGACGAGC AGTACTTCGA AGCGCTCGAA GAGTTCGGTG ACGACTTCGA CGCCCGCATG
GGTGCCGAGG CTGTCCGCGA GCTGCTGCAC GCTATTGATC TGGAGCACGA AATTGGCCGT
CTGCGTGAAG AAATTCCGCA AACCAATTCC GAGACCAAAA TCAAGAAGCT GTCCAAGCGT
CTGAAATTGA TGGAAGCCTT CCAGGGTTCC GGCAACCTTC CTGAGTGGAT GGTGCTGACC
GTTCTGCCGG TTCTGCCGCC AGATCTGCGT CCTCTGGTTC CGCTTGACGG TGGCCGTTTC
GCGACGTCCG ACCTCAACGA TCTGTATCGT CGAGTGATCA ACCGTAACAA CCGTCTGAAG
CGCCTGCTGG ATCTGTCCGC TCCCGATATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCGGTCG ATGCACTGCT CGACAACGGT CGTCGCGGTC GCGCGATCAC GGGTTCGAAC
AAGCGTCCTC TGAAATCCCT GGCTGACATG ATCAAGGGTA AGCAGGGTCG TTTCCGTCAG
AACTTGCTCG GTAAGCGTGT TGACTACTCG GGTCGTTCGG TAATTACCGT AGGTCCGACT
CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCTC TCGAGCTGTT CAAGCCGTTC
ATTTTCGGCA AGCTGGAAAT GCGTGGCCTG GCTACGACCA TCAAAGCTGC CAAGAAGATG
GTCGAGCGCG AGCTGCCAGA GGTCTGGGAC GTTCTCGCTG AGGTGATTCG CGAACACCCG
GTGCTTCTGA ACCGTGCGCC GACACTTCAC CGTCTGGGCA TCCAGGCGTT TGAACCGGTA
CTGATCGAAG GTAAGGCCAT TCAGCTGCAC CCATTGGTTT GTGCTGCGTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCTCTGACGC TGGAAGCTCA GCTCGAAGCG
CGCGCGCTGA TGATGTCGAC CAACAACATT CTGTCGCCAG CCAACGGTGA GCCAATCATC
GTTCCTTCGC AGGACGTTGT ACTGGGTCTG TACTACATGA CTCGCGAAGC GATCAACGCC
AAGGGCGAAG GTCGTGTATT TGCGGACCTG CAGGAAGTCG ACCGCGTATT CCGCGCCGGC
GAAGCGGCTC TGCACGCCAA GGTCAAGGTG CGTATCCACG AAACGGTCAA CGACCGTGAT
GGTGGCAGCG TCAAGAACAC CCGTATCGTC GACACCACTG TCGGCCGTGC GCTGCTGTTC
CAGGTGGTTC CGGCCGGCCT GTCCTACGAC GTCGTCAACC AGCCAATGAA GAAGAAAGCG
ATCTCCAAGC TGATCAACCA GTGCTATCGC GTGGTTGGCC TGAAAGAGAC CGTTATTTTC
GCTGACCAGT TGATGTACAC CGGTTTTGCC TACTCGACCA TTTCGGGTGT TTCCATCGGC
GTTAACGACT TCGTTATCCC TGATGAAAAA GCTCGCATCA TCGACGCGGC CACCGAAGAA
GTTAAAGAGA TCGAAAGTCA GTACGCCTCC GGCCTGGTAA CCCAGGGCGA GAAGTACAAC
AAGGTAATCG ACCTTTGGTC CAAGGCGAAC GACGAAGTCT CGAAAGCGAT GATGTCGAAC
CTGTCCAAAG AACGCGTTAT CGACCGTCAC GGCGTCGAAG TTGATCAGGA ATCCTTCAAC
TCGATGTACA TGATGGCTGA CTCCGGGGCG CGTGGTTCTG CTGCCCAGAT CCGTCAGCTG
GCCGGTATGC GTGGTCTGAT GGCCAAGCCT GACGGCTCCA TCATCGAAAC GCCGATCACT
GCGAACTTCC GTGAAGGTTT GAGCGTACTT CAGTACTTCA TCTCTACTCA CGGTGCTCGT
AAGGGTCTTG CGGATACCGC GTTGAAAACC GCTAACTCCG GTTATCTGAC ACGCCGTCTG
GTAGACGTCG CTCAGGATCT GGTGGTTACC GAGGTTGATT GCGGTACCGA GCACGGTCTG
CTGATGACTC CGCACATTGA AGGCGGTGAC GTTGTAGAGC CGCTGGGTGA GCGCGTATTG
GGTCGAGTCA TTGCCCGTGA CGTATTCAAG CCGGGCACGG AAGATGTCAT CGTCCCTGCT
GGCACGCTGG TAGACGAGAA GTGGGTCGAG TTCATCGAGC TGAACAGCAT CGACGAAGTA
ATCGTTCGTT CGCCAATCAG CTGTGAAACC CGCTACGGCA TCTGCGCCAA GTGCTACGGT
CGCGACCTGG CACGCGGTCA CCAGGTCAAC ATCGGTGAAG CTGTCGGCGT AATCGCTGCA
CAGTCGATCG GTGAGCCGGG TACCCAGCTG ACAATGCGTA CGTTCCACAT CGGTGGTGCG
GCAAGCCGGA CCTCGGCAGC CGATAGCGTT CAGGTGAAGA ATGGCGGTAC TGTCCGCCTG
CACAACCTGA AGCACGTCGA GCGTGTTGAC GGTCACCTGG TTGCGGTATC CCGCTCCGGT
GAGCTGGCAA TCGCAGATGA CTTCGGTCGT GAGCGTGAGC GTTACAAGCT GCCATACGGT
GCAGTGATTT CGGTGAAGGA AGGCGACAAG GTCGACGCTG GCTCTATAGT GGCCAAGTGG
GATCCGCACA CTCACCCAAT CGTCACCGAG ATGAAAGGTA CTGTTACCTA CGTAGGCATG
GAAGAAGGCA TCACGATCAA GCGTCAGACA GACGAATTGA CCGGTATGAC CAACATTGAA
GTGCTCGACG CCAAAGATCG CCCGGCTGCC GGCAAGGACA TCCGTCCTGC TGTGAAGATG
GTTGGTCTGG ATGGCAAGGA TCTGCTGCTG CCAGGTACTG ACGTACCGGC CCAGTACTTC
CTGCCGGCTA ACGCCCTTGT TGGTGTTGCT GACGGTGCGC AGATCGCGAT CGGTGATGTT
ATCGCTCGTA TTCCGCAGGA AACGTCGAAG ACTCGTGACA TCACCGGTGG TTTGCCGCGT
GTTGCCGACC TGTTCGAAGC GCGTCGTCCG AAAGAGGCGT CGATCCTTGC AGAAGTCAGC
GGTACCATCG CATTCGGTAA AGAGACCAAA GGCAAGCGCC GTCTGGTCAT CACCCCGAAC
GACGGTAGCG ATCCGTACGA GGAGCTGATT CCGAAGTGGC GTCACCTGAA CGTCTTCGAA
GGCGAGCAAG TGAACCGCGG CGAAGTTATC TCCGACGGCC CGAGCGATCC ACACGACATC
CTGCGTCTGC TGGGTGTGAG TGCGCTGGCC AAGTACATCG TCAACGAGAT TCAGGACGTA
TACCGTCTGC AAGGCGTGAA GATCAACGAC AAGCACATCG AGACGATTCT GCGTCAGATG
CTGCGTAAGG TTGAAATTGC CGAGTCTGGC GATTCCAGTT TCATCAAGGG CGACCAGATG
GAGCTGACTC ACGTACTGGT AGAAAACGAG CGTCTGAGCA CGGAAGACAA GTTTGTTTCC
AAGTTCACTC GCGTGTTGCT GGGTATCACC AAGGCATCGC TGTCTACCGA GTCGTTCATC
TCTGCGGCCT CCTTCCAGGA GACAACCCGC GTACTGACCG AAGCGGCTGT GACTGGCAAG
CGCGATTACC TGCGCGGCCT GAAGGAAAAC GTGGTCGTGG GTCGTCTGAT CCCGGCCGGT
ACCGGTCTGG CTTATCACAG CGAGCGCAAG CGTCGTCGTG AAATGGACAA ACCGACCCGT
GTCAGCGCGA GCGAAGTAGA AGCGGCTCTG ACGGAAGCAT TGAACTCCAG CGGTAATTGA
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| Protein sequence | MKDLLNLLKN QGQVEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLH AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLSAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEMRGL ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAINA KGEGRVFADL QEVDRVFRAG
EAALHAKVKV RIHETVNDRD GGSVKNTRIV DTTVGRALLF QVVPAGLSYD VVNQPMKKKA
ISKLINQCYR VVGLKETVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIIDAATEE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMSN LSKERVIDRH GVEVDQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLSVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EVDCGTEHGL LMTPHIEGGD VVEPLGERVL
GRVIARDVFK PGTEDVIVPA GTLVDEKWVE FIELNSIDEV IVRSPISCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADSV QVKNGGTVRL
HNLKHVERVD GHLVAVSRSG ELAIADDFGR ERERYKLPYG AVISVKEGDK VDAGSIVAKW
DPHTHPIVTE MKGTVTYVGM EEGITIKRQT DELTGMTNIE VLDAKDRPAA GKDIRPAVKM
VGLDGKDLLL PGTDVPAQYF LPANALVGVA DGAQIAIGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEASILAEVS GTIAFGKETK GKRRLVITPN DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSDPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEIAESG DSSFIKGDQM ELTHVLVENE RLSTEDKFVS KFTRVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERK RRREMDKPTR
VSASEVEAAL TEALNSSGN
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