Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4519 |
Symbol | |
ID | 3370059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 5383101 |
End bp | 5384495 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637654879 |
Product | major facilitator transporter |
Protein accession | YP_237587 |
Protein GI | 66047746 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.301476 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.140313 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGATA CCCACAGCGA GCGTATGAGT AGCGGCGAGA CCCGCGCAGC AGGCGGTCTG GCCCTGGTGT TCGCGTTCCG CATGCTTGGC ATGTTCATGG TCTTGCCGGT TCTGGCAACC TACGGCATGG ACCTGGCAGG CGCGAGCCCT GCACTGATCG GTCTGGCGAT TGGCGCCTAC GGCCTGACCC AGGCGGTGTT GCAGATACCG TTCGGGATCA TTTCCGACCG TATCGGCCGG CGACCGGTCA TTTATTTCGG CCTGATCATC TTTGCGATCG GCAGCGTGGT GGCGGCGAAC GCGGATTCGA TCTGGGGAAT CATTGCCGGA CGTATCCTGC AGGGGGCTGG CGCCATTTCC GCGGCAGTCA TGGCGCTGCT CTCCGACCTG ACCCGCGAAC AGCACCGCAC CAAGGCCATG GCCATGATCG GCATGACCAT TGGTCTGTCG TTCGCCATCG CCATGGTTGT CGGCCCGGTG ATCACCGGCA TGTTCGGGCT TTCCGGATTG TTCCTGGCCA CCGGCGGCAT GGCCTTGATA GGCGTTCTCA TCGTCGCCTA CGTGGTGCCC AAGGCCAGCG GGGCATTAAT GCATCGCGAG TCCGGCGTCG CCAAACAGGC GCTGGGGGCG ACGTTGCGTC ATCCGGACCT GCTGCGCCTG GATTTGGGTA TCTTCGTGTT GCATGCGATG CTCATGTCCA GCTTCGTGGC CTTGCCACTG GCGCTGGTCG AAAAAGCCGG TCTGCCCAAG GAAGAACACT GGTGGGTCTA CCTGACCGCC TTGCTGGTTT CCTTCTTCGC GATGATCCCG TTCATCATCT ATGGCGAGAA GAAACGTCAA ATGAAGCGCG TTCTGCTGGG CGCCGTCACA GTTTTGATGC TGGCTGAGCT ATTCTTCTGG GCCTACGGGG ACACGTTGCG GGCACTGGTC ATCGGGACAG TGGTATTCTT CACCGCGTTC AACCTGCTGG AAGCATCCTT GCCGTCGTTG ATCAGCAAGG TTTCACCGGC CGGCGGAAAA GGCACGGCAA TGGGAGTTTA TTCCACCAGC CAGTTTCTTG GATCGGCCGC AGGTGGGATA CTGGGCGGCT GGTTGTTCCA GCACGGTGGG CTCGATGTGG TGTTCCTGGG TGGTGCAGCC ATGGCCGCCG TCTGGCTCGC CTTCGCAGTG ACCATGCGAG AACCGCCTTA CGTGACCAGC CTACGTCTGC CGTTGTCGCC GCAGGCGCAG CGTGAAGCAG GCCTGGCAGA GCGTTTGATG TCCGTAGCAG GCGTGACAGA TGCAGTGGTG GTTGCGGAAG AGGCAGCCAT CTACATAAAA CTCGACACAA AATTATTGGA TCGTGCCTCT CTCGAAAAGC TGGTCAATCC AGCATCAGAA GCGTGCGAAG CCTAG
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Protein sequence | MHDTHSERMS SGETRAAGGL ALVFAFRMLG MFMVLPVLAT YGMDLAGASP ALIGLAIGAY GLTQAVLQIP FGIISDRIGR RPVIYFGLII FAIGSVVAAN ADSIWGIIAG RILQGAGAIS AAVMALLSDL TREQHRTKAM AMIGMTIGLS FAIAMVVGPV ITGMFGLSGL FLATGGMALI GVLIVAYVVP KASGALMHRE SGVAKQALGA TLRHPDLLRL DLGIFVLHAM LMSSFVALPL ALVEKAGLPK EEHWWVYLTA LLVSFFAMIP FIIYGEKKRQ MKRVLLGAVT VLMLAELFFW AYGDTLRALV IGTVVFFTAF NLLEASLPSL ISKVSPAGGK GTAMGVYSTS QFLGSAAGGI LGGWLFQHGG LDVVFLGGAA MAAVWLAFAV TMREPPYVTS LRLPLSPQAQ REAGLAERLM SVAGVTDAVV VAEEAAIYIK LDTKLLDRAS LEKLVNPASE ACEA
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