Gene Psyr_4502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_4502 
Symbol 
ID3370042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp5366138 
End bp5367457 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content64% 
IMG OID637654862 
Productextracellular solute-binding protein 
Protein accessionYP_237570 
Protein GI66047729 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.714222 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTCCA TCCGTAAGAT GTTTTCCGTG CTGGCCCTGC TGTCGCTCGC TGCAAACGCC 
TTCGCCGCGG CACCGGCCGA GTTCTGGTAC AGCCACAGTG GCGCGGCCGG GAGTGCCATC
GCGGATCTGT GCAGAAGCTT CAATGCGCCA CGCGAGGAAG GTGATCGCCT GCACTGTGTC
CGCCAGGGCA GTTATGAGCA GACGCTGCAG AAAACCGTAG CGGCTTACCG GGCGGGCATA
GGCCCGGCAC TGGTGGAGAT TTACGACGTT GCCACGCCTG ACATGCTGCT GGGCGGTGCC
ACCCGACCTG TCGAGGCGAT CATGGCCGAT CATCACAGGG CCTATCCCGA CGATACCTTT
CTGCCAGCCT TGCGGCGCTA TTACGCCGAC GACCACGGCA CGCTCGCGGC GCAGCCTTTT
GCGGCGTCCA CAGCCGTGCT TTATACACAC CGGAAGGCGC TGGCCGCTGC CGGGATCAGC
GAGCCACCCG CCACCTGGGA AGCCTTTGCG GATGCCTTGC GGGCCCTGAA GAAAAACGGT
CAGCAATGCC CGCTCGTCAG CGCCTTTGCC CCCTGGATCT GGCTTGAGCA AACCAGCGCA
GCGCAAGGCA CCGACGTTGC GATTCGCTCC GCAGGCGGTG ACCGCTATCA GTTCGACGAA
GGCCCCCATC TGCGCCTCAT GAAAGACCTC GCGCAATGGA CCTCCCAAGG TCTGGTGGTC
CATGAGGATG CAACCCGCAG CGGGCAGCAG GCGCTGGCGT TCGCCACCGA CGATTGCGCC
ATGCTGCTCG ACTCCACCGG GGCGTGGAAT GTTGTACACA GCACGCTCAA ATCCGATATC
CAGGTCACGG CACTGCCGAT TTACGCGGCC ACCCAGCGAC GTGCCAACGT TCCCGGAGGT
TCCTCGCTGT GGGTCATGCG CGGGCATTCC GTCAGGGATT ACCGGCTGGT CTCGGAATTT
CTGGCGTTCG TGCTGCAACC GGACAACCAG TTGATATTCA GCGCCCGAAC GGGCTACCTG
CCCGTTACCC AGGCCGCCGC TGCACGTTTG CAATCCGCAG CCAGCGAGCC ATCGGCAATC
ACGGTCGGAC TGACAGCGCT GGACGATATC GACGGTCAGC CTTCCGCGCC TTTGCGCTGC
GGCTTTATCA CGCTGATGCG CCTCATCTGG TCGCAGGAAA TGGAGAACGC GCTCGCGGGT
CGCCAGAGCA TCGATCTGGC CCTGCGCCAG ACGACGCTAC GGGCCAACGA GCTGCTGGGT
CTGTTTCAAC AGATGCACCG CGCCCAGGCC AGCAACGAGT CGAGCGAGGC CACGCCATGA
 
Protein sequence
MPSIRKMFSV LALLSLAANA FAAAPAEFWY SHSGAAGSAI ADLCRSFNAP REEGDRLHCV 
RQGSYEQTLQ KTVAAYRAGI GPALVEIYDV ATPDMLLGGA TRPVEAIMAD HHRAYPDDTF
LPALRRYYAD DHGTLAAQPF AASTAVLYTH RKALAAAGIS EPPATWEAFA DALRALKKNG
QQCPLVSAFA PWIWLEQTSA AQGTDVAIRS AGGDRYQFDE GPHLRLMKDL AQWTSQGLVV
HEDATRSGQQ ALAFATDDCA MLLDSTGAWN VVHSTLKSDI QVTALPIYAA TQRRANVPGG
SSLWVMRGHS VRDYRLVSEF LAFVLQPDNQ LIFSARTGYL PVTQAAAARL QSAASEPSAI
TVGLTALDDI DGQPSAPLRC GFITLMRLIW SQEMENALAG RQSIDLALRQ TTLRANELLG
LFQQMHRAQA SNESSEATP