| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4359 |
|---|
| Symbol | lipB |
|---|
| ID | 3369899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5212943 |
|---|
| End bp | 5213599 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637654719 |
|---|
| Product | lipoate-protein ligase B |
|---|
| Protein accession | YP_237427 |
|---|
| Protein GI | 66047586 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0321] Lipoate-protein ligase B |
|---|
| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.100426 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCTA CGCTGGGTTT TCGTGATCTG GGCCTGATCG ATTACGAAAC CGCCTGGCAC
GCCATGAAGC GCTTTACCGA CGAGCGTGGC CGCGAGGCTG CCGATGAGGT CTGGCTGGTT
CAGCATCCGC CGGTTTTCAC TCAGGGACAG TCCGGCAAGG CCGAGCATTT GCTGCTGCCG
GGTAATATTC CTGTCGTACA GGTCGATCGT GGCGGCCAAG TGACTTATCA TGGTCCGGGC
CAACTGGTGG CTTATCTGAT GCTGGACGTC AGGCGCCTTG GTTTCGGCGT TCGCGATCTG
GTCACCCGGA TCGAGAACAC CCTCATCGCC TTGCTCGCCG ACTACGGCGT CAAGGCAGCA
GCCAAGGCTG ATGCCCCTGG CGTATACGTC GACGGCGCGA AGATAGCGTC GCTCGGTCTG
CGCATTCGCA ACGGCTGCTC GTTTCATGGT CTGGCGTTGA ACGTCGACAT GGACCTTGAG
CCGTTCCGCC GCATCAACCC GTGCGGATAC GCCGGGCTGG CCATGACCCA ACTGAGCGAT
CAGGCAGGGC AGATAGAATT TTCCGAGGTA AGTGCCCGAC TGCGTGCGCA GCTCGTCAAA
CACCTCGACT ACGCTGAGCA GGCGACCCTT ACGGGCGGAA TAAACCATTA TGACTGA
|
|---|
| Protein sequence | MAATLGFRDL GLIDYETAWH AMKRFTDERG REAADEVWLV QHPPVFTQGQ SGKAEHLLLP
GNIPVVQVDR GGQVTYHGPG QLVAYLMLDV RRLGFGVRDL VTRIENTLIA LLADYGVKAA
AKADAPGVYV DGAKIASLGL RIRNGCSFHG LALNVDMDLE PFRRINPCGY AGLAMTQLSD
QAGQIEFSEV SARLRAQLVK HLDYAEQATL TGGINHYD
|
|---|
| |