| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4338 |
|---|
| Symbol | |
|---|
| ID | 3369878 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 5189819 |
|---|
| End bp | 5191468 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637654698 |
|---|
| Product | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region |
|---|
| Protein accession | YP_237406 |
|---|
| Protein GI | 66047565 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGA ATCAATTCGC CGAAACCCAC GAAGTCACCA ATCAACCGCC GCCGCTGGAC
GGGGCAAACC TTTACCGTAT CGACGTGCCG CTTCAGGAGT GGAGCAGCAG ATTCGGTGCA
GGCTGGGCGC AGCCGCGTAT CGACGCCTAT GGTGCGCTGG CAGGAGGTCC GCTGATGGCG
GCGGGCTTCC TGGCCAACCA GCACAGGCCC GAGTTTGCCA GCCATGACCG CTACGGGCAC
CGCATCGACC TGGTCGAATT CCACCCGGCG TATCACCAGT TGATGAGCAC GGCCATCGCG
CATGGCATCC CGTCGTTGCC GTGGACCGAG CCGCAGCCCG GTGCTCACGT GGCGCGTGCG
GCCATGAGCT ATCTGCACAC CCAGGCTGAG CCCGGCAGCG GCTGCCCGCT GACCATGACC
TTTGCCAGCG TGCCTGCGCT CAGGCTGCAG CCGGATCTGG CTGAAATCTG GCTGCCCAAG
GTGCTGTCGA CTGAGTACGA TCCGCGCAAC GTGGGCATTG CGCACAAGAA CGGCGCGACC
ATCGGCATGG CCATGACCGA GAAGCAGGGC GGCACCGACG TGCGGGCCAA TACCACGCGT
GCGTTTTCGG TGGGGGCCGG CGGCCCCGGC CAGGCCTACG AACTGGTCGG GCATAAATGG
TTCTGCTCGG CACCCATGTG CGATGCCTTC CTGACCCTGG CGCAGACCGA CAAGGGCCTC
AGCTGTTTTC TGCTGCCACG CCACCGGCCT GATGACACGC GTAACGAGTT CTACATTCAG
CGCCTGAAAA ACAAGCTCGG CAACTGGTCC AACGCCTCCA GCGAGGTCGA GTTTCGCGGT
GCGCTGGCAT GGATGATCGG CGAAGAAGGG CGCGGCGTGC CGACCATCAT CGAAATGGTC
GCCATGACCC GTTTCGACTG CATGATCGGC TCCAGTGCCC TGATGCGTCA GGCGCTGACT
CAGGCGACTC ATCATTGCGC GCACCGTGCG GTCAGTGGCC GGTTGCTCGC CGAGCAGCCG
TTGATGCAGA ACGTGCTGGC TGACCTGGCA CTGGAAAGCG AGGCCGCGCT GGCCCTGACC
CTGCGTGTGG GGCGCGCGCT TGACCACCTG GATGATGATC ACGAAAAGCG TTTTGTGCGC
CTGGTCACCG CAGTGGGCAA ATACTGGATC TGCAAGCGCG CCCCGGCCAT GATCAACGAA
GCCGCCGAGT GCCTGGGTGG CGCCGGTTAT GTCGAGGACA GCATTGTGCC CCGCTTGTAC
CGCGAAGCGC CGGTCAACTC GACATGGGAA GGCTCCGGCA ACGTGCAATG CCTGGACGTG
CTGCGAACCC TGTCCAAGGA GCCCGGCGCA CTCGATGCGC TGTTCGACGA GCTGGGCGAC
GGGCATGGCG ACCGGCATCT GGCGGCGCAC ATCGGCTCGC TCAAGGCCGC GTTTCAGGAC
ACCGGCGACA TTCAGTATCG CGCCCGCCAG TTGACCGAAG ACATCGCCAT CGCCTTGCAG
GGCAAGCTGC TGCTGGAAGC GGGTAACGCG GCGGTCAGTG ACGGCTTCAT TGCCGGTCGG
ATAGCGTCCG GCGGGCGGGT GTATGGCGCA TTGCCCACGG GCGTTGACGT AGAAACATTG
CTGCAAAGGT CCTCGCCGCA GGTGGCATGA
|
|---|
| Protein sequence | MNLNQFAETH EVTNQPPPLD GANLYRIDVP LQEWSSRFGA GWAQPRIDAY GALAGGPLMA
AGFLANQHRP EFASHDRYGH RIDLVEFHPA YHQLMSTAIA HGIPSLPWTE PQPGAHVARA
AMSYLHTQAE PGSGCPLTMT FASVPALRLQ PDLAEIWLPK VLSTEYDPRN VGIAHKNGAT
IGMAMTEKQG GTDVRANTTR AFSVGAGGPG QAYELVGHKW FCSAPMCDAF LTLAQTDKGL
SCFLLPRHRP DDTRNEFYIQ RLKNKLGNWS NASSEVEFRG ALAWMIGEEG RGVPTIIEMV
AMTRFDCMIG SSALMRQALT QATHHCAHRA VSGRLLAEQP LMQNVLADLA LESEAALALT
LRVGRALDHL DDDHEKRFVR LVTAVGKYWI CKRAPAMINE AAECLGGAGY VEDSIVPRLY
REAPVNSTWE GSGNVQCLDV LRTLSKEPGA LDALFDELGD GHGDRHLAAH IGSLKAAFQD
TGDIQYRARQ LTEDIAIALQ GKLLLEAGNA AVSDGFIAGR IASGGRVYGA LPTGVDVETL
LQRSSPQVA
|
|---|
| |