| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4195 |
|---|
| Symbol | dnaK |
|---|
| ID | 3369734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4990702 |
|---|
| End bp | 4992618 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637654555 |
|---|
| Product | molecular chaperone DnaK |
|---|
| Protein accession | YP_237263 |
|---|
| Protein GI | 66047422 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | [TIGR02350] chaperone protein DnaK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.697831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAGAA TTATCGGTAT CGACCTGGGG ACTACCAACT CCTGCGTCTC CATTCTGGAA
AACGGTAACG TCAAGGTTAT CGAGAACGCC GAAGGTACTC GTACTACACC TTCGATCATT
GCTTACGCAA ATGATGGCGA GATTCTGGTC GGCCAGTCCG CGAAGCGTCA GGCGGTCACC
AACCCGCACA ACACGCTGTA CGCGGTTAAG CGTCTGATCG GTCGCAAGTT CGAAGAGGAT
GTCGTTCAGA AAGACATCCA GATGGTCCCT TACAAGATCG TCAAGGCTGA CAACGGTGAT
GCCTGGGTTG AAGTGAATGG CCAGAAAATG GCGCCTCCTC AGATTTCCGC TGAAATCCTG
AAGAAAATGA AAAAGACTGC CGAAGACTAT CTCGGTGAAG CGGTTACCGA AGCGGTCATC
ACCGTTCCGG CCTACTTCAA CGACAGTCAG CGTCAGGCTA CCAAGGACGC TGGCCGTATT
GCCGGTCTGG ACGTCAAACG CATCATCAAC GAACCTACCG CAGCCGCGCT GGCTTACGGG
ATGGACAAGG CCAAGGGCGA CCACACTGTC ATCGTGTATG ACCTGGGTGG CGGTACCTTC
GACGTCTCGG TCATCGAGAT CGCTGAAGTC GATGGCGAGC ACCAGTTCGA AGTGTTGGCC
ACCAACGGCG ACACGTTCCT GGGTGGTGAA GACTTCGACA TTCGTCTGAT CGACTACTTC
GTCGACGAAT TCAAGAAAGA AAGCGGCATG AACCTCAAGG GTGATCCGCT GGCCATGCAG
CGTCTGAAAG AAGCTGCCGA AAAAGCCAAG ATCGAGCTGT CTTCCAGCAC CCAGACCGAA
GTCAACCTGC CGTACATCAC TGCAGACGCA ACCGGTCCGA AGCACCTGGT AGTGAAGATT
TCCCGCTCCA AACTGGAATC GCTGGTTGAA GACCTGGTTC AGCGCACCAT CGCTCCTTGC
GAAATGGCGC TGAAAGATGC TGGCATCGAC AGGAGCAAGA TCAACGACGT GATTCTGGTC
GGTGGTCAGA CACGTATGCC GCTGGTTCAG AAGCTGGTGA CCGAGTTCTT CGGCAAAGAA
GCACGCAAAG ACGTCAACCC TGACGAAGCC GTTGCCATGG GTGCTGCCAT TCAGGGCGCA
GTCTTGGCGG GTGATGTCAA AGACGTTCTG CTGCTGGACG TCAGCCCGCT GACTCTGGGT
ATCGAAACCA TGGGCGGCGT GATGACTGCG CTGATCGAGA AAAACACCAC GATTCCTACC
AAGAAATCCC AGGTGTTCTC GACTGCCGAT GACAACCAGA ACGCGGTAAC CATTCACGTC
CTGCAGGGTG AGCGTAAGCA AGCCGCTCAG AACAAGTCTC TGGGCAAGTT CGACCTGGCC
GAGATTCCAC CTGCTCCACG TGGCGTGCCA CAGATCGAAG TGACCTTCGA CATCGACGCA
AACGGTATTC TGCACGTTGG CGCGAAAGAC AAGGCCACCG GCAAGCAGCA GTCCATCGTG
ATCAAGGCCA ACTCCGGTCT GTCCGAGGAA GAAATTCAGC AGATGGTTCG CGATGCTGAA
GTCAACTCCG AAGAAGATCG CAAGTTCGAA GAGCTGGCCT CTGCCCGTAA CCAGGGTGAT
GCGCTGGTCC ACTCGACTCG CAAGATGATC GCTGACGCGG GTGACAAGGT CACTGCTGAA
GAGAAGACTG CGGTAGAAGC TGCGCTGGTT GCTCTGGAAG CCGCTATCAA GGGCGACGAC
AAGGCTGCCA TTGAAGCCAA GGTCGAAGAG CTGTCGAAGG TTTCCGCGCC AATCGCTCAG
AAGATGTATG CCGAGCAGGC TGAAAACCCG GACGCTGCGG CCAAGCCAGC TGAAGAAACT
GCCAAGGCTG ACGATGTTGT CGACGCCGAG TTTGAAGAAG TAAAAGACCA CAAGTAA
|
|---|
| Protein sequence | MGRIIGIDLG TTNSCVSILE NGNVKVIENA EGTRTTPSII AYANDGEILV GQSAKRQAVT
NPHNTLYAVK RLIGRKFEED VVQKDIQMVP YKIVKADNGD AWVEVNGQKM APPQISAEIL
KKMKKTAEDY LGEAVTEAVI TVPAYFNDSQ RQATKDAGRI AGLDVKRIIN EPTAAALAYG
MDKAKGDHTV IVYDLGGGTF DVSVIEIAEV DGEHQFEVLA TNGDTFLGGE DFDIRLIDYF
VDEFKKESGM NLKGDPLAMQ RLKEAAEKAK IELSSSTQTE VNLPYITADA TGPKHLVVKI
SRSKLESLVE DLVQRTIAPC EMALKDAGID RSKINDVILV GGQTRMPLVQ KLVTEFFGKE
ARKDVNPDEA VAMGAAIQGA VLAGDVKDVL LLDVSPLTLG IETMGGVMTA LIEKNTTIPT
KKSQVFSTAD DNQNAVTIHV LQGERKQAAQ NKSLGKFDLA EIPPAPRGVP QIEVTFDIDA
NGILHVGAKD KATGKQQSIV IKANSGLSEE EIQQMVRDAE VNSEEDRKFE ELASARNQGD
ALVHSTRKMI ADAGDKVTAE EKTAVEAALV ALEAAIKGDD KAAIEAKVEE LSKVSAPIAQ
KMYAEQAENP DAAAKPAEET AKADDVVDAE FEEVKDHK
|
|---|
| |