| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4104 |
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| Symbol | murD |
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| ID | 3369640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4893201 |
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| End bp | 4894547 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637654462 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_237172 |
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| Protein GI | 66047331 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.764687 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCCTGA TCGTTTCCGA CCGCTTCCGC ATTGTCGTGG GTCTAGGCAA AAGCGGCATG
TCCCTGGTTC GCTTCCTGGC GAACCAGGGC GTGTCCTTTG CCGTGGCCGA CACGCGGGAG
AATCCTCCTG AGCTGGCGAC CTTGCGTCGC GACTATCCGC AGGTGGAAGT GCGTTGTGGC
GAGCTGGACG TGGATTTCCT CTGCCGTGCC GATGAGCTGT ATGTCAGCCC CGGTCTGGCC
CTGGCCACCC CGGCCCTGCA GCAGGCGCAC GCACGCGGCG TCAAACTGTC GGGTGACATC
GAACTGTTCG CGCGTTACGC GAAGGCGCCG GTGATTGCCA TTACCGGCTC GAATGCAAAA
AGCACCGTGA CCACGCTGGT CGGCGAGATG GCCGCTGCCG CTGGAAAGCG TGTAGCGGTG
GGCGGCAATC TTGGCACTCC GGCGCTGGAC CTGCTCAGCG ATGAGGTCGA GCTGTACGTG
ATGGAGCTCT CCAGCTTTCA GCTCGAAACC ACCGACCAGC TCAATGCTGA AGTGGCGACC
GTGCTGAATA TCAGCGAAGA CCATATGGAC CGCTACAGCG GCCTGCCTGC CTACCACCTG
GCCAAGCACC GGATTTTCCG TGGCGCGCGG CAAGTGGTGG TCAATGGTCA GGATGCGCTG
TCCCGTCCGC TGATTGGCGA AGGCCTGCCG TGCTGGACAT TCGGCCTCAA CAAGCCCGAC
TTCCATGGTT TCGGCCTGCG TGAAGAGAAC GGCGAAAAGT ACCTGGCGTT CCAGTTTGAA
AACCTCATGC CGGTGCGTGA GCTGAAAGTG CGCGGTGCGC ACAATCAGGC CAACGCGCTT
GCCGCCCTGG CGCTCGGGCA TGCGGTCGGC CTGCCGTTCG ACGCCATGCT CGCCAGCCTG
CGTGAATTCA CCGGCCTGGA GCATCGCTGC CAGTGGCTGC GCGAGCACGA TGGCGTTCAT
TACTACAACG ATTCCAAAGC CACCAATGTC GGTGCCGCAC TGGCTGCCAT CGAAGGGCTG
GGCTCGGATA TCGACGGCAA GCTGGTGCTG ATCGCCGGCG GCGATGGCAA AGGCGCCGAT
TTCAGCGGTT TGCGTGCGCC AGTCGCCAGG CATTGCCGCG CGGCGGTACT GCTTGGGCGT
GATGCCGAGC TGATTGCCCA GGCATTGGGC GACGCCGTTC CGCTGCTGCG TGTCGACACC
GTCCAGGCGG CTGTCGAGCA CAGCGCAAAA CTGGCGCAGT GTGGCGACGC CGTATTGCTT
TCTCCTGCAT GCGCCAGTCT GGACATGTTC AAGAATTATG AAGAGCGCGG ACGTGTGTTC
GCGCAGGCAG TGGAGTGCTT GTCATGA
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| Protein sequence | MSLIVSDRFR IVVGLGKSGM SLVRFLANQG VSFAVADTRE NPPELATLRR DYPQVEVRCG
ELDVDFLCRA DELYVSPGLA LATPALQQAH ARGVKLSGDI ELFARYAKAP VIAITGSNAK
STVTTLVGEM AAAAGKRVAV GGNLGTPALD LLSDEVELYV MELSSFQLET TDQLNAEVAT
VLNISEDHMD RYSGLPAYHL AKHRIFRGAR QVVVNGQDAL SRPLIGEGLP CWTFGLNKPD
FHGFGLREEN GEKYLAFQFE NLMPVRELKV RGAHNQANAL AALALGHAVG LPFDAMLASL
REFTGLEHRC QWLREHDGVH YYNDSKATNV GAALAAIEGL GSDIDGKLVL IAGGDGKGAD
FSGLRAPVAR HCRAAVLLGR DAELIAQALG DAVPLLRVDT VQAAVEHSAK LAQCGDAVLL
SPACASLDMF KNYEERGRVF AQAVECLS
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