| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_4039 |
|---|
| Symbol | |
|---|
| ID | 3369575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 4825542 |
|---|
| End bp | 4826030 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637654397 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_237107 |
|---|
| Protein GI | 66047266 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
|---|
| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.999117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.702683 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTG ACGCATATAT CAAAATCGAA GGCATTCCAG GCGAAGCGCT GGATGATCGC
TACAAGGACT GTATCGAGAT CACCGGGTAT GGTTTCGGCA TGCACCAAAG TACCTCCGCC
ACGGCGAGTT CTTCAGGAGG CGCCTCGTCG GGTCGGACGT CCTTGAGTGA TTTCACGTTC
ACCAAATCAC TGGACAAGTC GAGCTGCAAG CTCATGGAAA GTTTGTGCGC GGGCAAGCAC
CTGAAGGAAG TCGTCTTGTC ACTGCATCGT GCAGGCGGAG ACAAGGTCAA ATACTTTGAA
GTGCTGCTGG AAGAAGTCAT CATTTCCAAC TACACCCAGC ATGCCAACGA TGGCATCCCC
AGCGAGACCA TCAGCCTCAA CTACGGAAAA ATAAAAACCA CCTACACCCA GCAGAAAAGA
TCTGACGGTG CCGGTGGAGG GAATGTCTCG GGTGGCTGGA ACCGTATCAA CAACAAGGTC
TATTCCTGA
|
|---|
| Protein sequence | MAFDAYIKIE GIPGEALDDR YKDCIEITGY GFGMHQSTSA TASSSGGASS GRTSLSDFTF
TKSLDKSSCK LMESLCAGKH LKEVVLSLHR AGGDKVKYFE VLLEEVIISN YTQHANDGIP
SETISLNYGK IKTTYTQQKR SDGAGGGNVS GGWNRINNKV YS
|
|---|
| |