Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4004 |
Symbol | |
ID | 3369540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4767044 |
End bp | 4768540 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637654362 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_237072 |
Protein GI | 66047231 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.074494 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCAGTC TTAATCAAAC GCCTCCGGCC ATCCGCAGCA TCCTGTTTGC GTTGATGATG GCAGTCCTGC TCAGCGCGCT GGACCAAACC ATCGTCGCGG TCTCGATGCC CGCCATCTCT GCCCAGTTCA GAGACATCGA TCTACTGGCC TGGGTCATAT CCGCCTACAT GGTGTCGCTG ACCGTGGCCG TGCCGATCTA CGGCAAACTC GGCGATCTTT ACGGGCGCCG TAAACTGATG CTGTTCGGGC TGGGGATTTT TACCCTGGCG TCGCTGTTCT GTGGCCTGGC GCAGAGCATG GAACAACTGG TCCTGGCGCG CGTCCTGCAA GGCATCGGCG CGGGCGGGAT GGTTTCGGTC AGCCAGGCGA TCATCGCCGA CATCGTTCCA CCTCGCGAAC GTGGCCGCTA TCAGGGTTAT TTCAGCAGCA TGTACGCCGT GGCCAGCGTC GCCGGGCCGG TGCTTGGCGG CCTGATGACT GAATACCTGT CCTGGCGCTG GGTGTTCCTG ATCAATCTGC CATTGGGGGC CGCTGCGCTG ATCGTCGCGT ATCGGACCCT GGTTGGCCTG CCGGTGCCGC AGCGCAAGCC GATCATCGAT TACCTGGGTA CCGTGCTGAT GATCATCGGC CTGACAGCGC TGCTGTTGGG GATTACCGAA ATTGGCCAGG GTCATGGCCT GGGCGATGCC GAGGTTCAGT TGTTACTGGG CACGGCCCTG CTGACGCTGG CCATTTTCGT CTGGTACGAA CGTCGCACTG CCGAACCGTT GCTGCCCATG CATCTGTTCA CCAACAAGAG CGCCGTGCTG TGCTGGTGCA CCGTGTTCTT CACCAGTTTT CAGGCCATCT CCCTGATTGT CCTGATGCCG CTGCGTTACC AGACCGTTAC CGGGGGCGGC GCAGACAGCG CCGCCCTGCA CTTGCTTCCA CTGGCGATTG GCATGCCGAT GGGCGCCTAT TTTGCCGGGC GACGCACCGC TCATACCGGG CGCTACAAGC CGCTGATCCT GACCGGTGCG CTGTTGATGC CGGTTGCGAT TCTGGGCATG GCCTTCACGC CGCCGCAATC GCTGATAGTG ATGAGCCTGT TCATGGTCCT CACCGGTGTT GCGACCGGCA TGCAGTTCCC CACGTCATTG GTCGGCACTC AGAATTCGGT TCAGCCCCGG GATATGGGCG TGGCGACCAG CACGACCAAT CTGTTCCGCT CACTGGGTGG TGCAGTGGGC GTGGCACTGA TGTCGGCGCT GCTGTTGGCC ATGTTGCAGC ACACCGGGGT CGGCCAACTC GGCGCAGGAG CGCTGGGTAG CGAAGGCAGC TCCGGCAACG TCCTGCTCGA CAGTCTGAAC GCGGCAACCG GCCCCGCGCT GGAAACCCTG CGCACCGAAC TGGCAGTGAC CTTCAGAAAC CTGCTGATCA CCAGCGCGGC CATTTCGCTG CTCGGTCTTG CGGCAGCCGC AGTGATGCCC AATACATTAT TGCGAGGACG GGACTGA
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Protein sequence | MTSLNQTPPA IRSILFALMM AVLLSALDQT IVAVSMPAIS AQFRDIDLLA WVISAYMVSL TVAVPIYGKL GDLYGRRKLM LFGLGIFTLA SLFCGLAQSM EQLVLARVLQ GIGAGGMVSV SQAIIADIVP PRERGRYQGY FSSMYAVASV AGPVLGGLMT EYLSWRWVFL INLPLGAAAL IVAYRTLVGL PVPQRKPIID YLGTVLMIIG LTALLLGITE IGQGHGLGDA EVQLLLGTAL LTLAIFVWYE RRTAEPLLPM HLFTNKSAVL CWCTVFFTSF QAISLIVLMP LRYQTVTGGG ADSAALHLLP LAIGMPMGAY FAGRRTAHTG RYKPLILTGA LLMPVAILGM AFTPPQSLIV MSLFMVLTGV ATGMQFPTSL VGTQNSVQPR DMGVATSTTN LFRSLGGAVG VALMSALLLA MLQHTGVGQL GAGALGSEGS SGNVLLDSLN AATGPALETL RTELAVTFRN LLITSAAISL LGLAAAAVMP NTLLRGRD
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