Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3904 |
Symbol | |
ID | 3369439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4645020 |
End bp | 4645877 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637654261 |
Product | major intrinsic protein |
Protein accession | YP_236972 |
Protein GI | 66047131 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.333674 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCATCG CACTAAAACA ACCGACGCTC ACCGGGCAAT GTGTGGCTGA ATTTCTTGGC ACCGCCCTGA TGATTTTTTT CGGCACAGGA TGCGTTGCAG CGCTCAAGGT AGCGGGAGCC ACCTTCGGCC TTTGGGAAAT CAGCATCATC TGGGGCATTG CCGTCAGCAT GGGGATCTAC CTCAGCGCCG GCATTTCGGG TGCCCACCTC AACCCGGCCG TCAGCATCGC GCTGAGTCTG TTCGCCGGTT TTGAAAAACG TAAATTGCCC TTCTATATCT CGGCGCAAAT CGCAGGCGCG TTCTGCGGAG CGGGTCTGGT GTACCTGCTG TACATCAGCC TTTTTTTCGA CTTCGAACAT GCTCACCACA TCATTCGCGG CAGCGAGCAG AGTCTTGAAC TGGCCTCGGT GTTCTCGACG TATCCGAACC CGGCCATTTC GGTCGGTCAG GCCTTTCTGG TCGAAGTGGT CATCACCACC ATTCTGATGG GTGTGATCAT GGCCTTGGGC GATGACAGCA ATGGTTTGCC ACGCGGCCCG CTGGCACCCT TGCTGATCGG CCTGCTGGTA GCCGTGATCG GCAGCTCGAT GGGCCCGCTG ACCGGTTTCG CCATGAACCC GGCACGCGAC TTCGGTCCGA AGCTGATGAC CTTCTTCGCT GGCTGGGGTG AAATGGCCTT CACCGGTGGT CGCGACATTC CTTATTTCCT GGTTCCGATT TTTGCGCCCA TTCTGGGTGC CTGCCTTGGT GCTGCCGGCT ACCGCGCGCT GATTGCGCGT CATCTGCCAA GCGCCGCTCC TGTTGAAAAT GAAAAAGAGG CTCCTGTGGT TCGCGGCAAA GTTCAGGCTT CATCTTGA
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Protein sequence | MSIALKQPTL TGQCVAEFLG TALMIFFGTG CVAALKVAGA TFGLWEISII WGIAVSMGIY LSAGISGAHL NPAVSIALSL FAGFEKRKLP FYISAQIAGA FCGAGLVYLL YISLFFDFEH AHHIIRGSEQ SLELASVFST YPNPAISVGQ AFLVEVVITT ILMGVIMALG DDSNGLPRGP LAPLLIGLLV AVIGSSMGPL TGFAMNPARD FGPKLMTFFA GWGEMAFTGG RDIPYFLVPI FAPILGACLG AAGYRALIAR HLPSAAPVEN EKEAPVVRGK VQASS
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