| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3696 |
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| Symbol | rumA |
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| ID | 3369231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4383042 |
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| End bp | 4384397 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637654055 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_236766 |
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| Protein GI | 66046925 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.116143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00123497 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCAAGC ATGAAAGAGG TTTGCGCTTT CAGCCTGCGG GCGGCGTTAA AACCGTACAG
ATTCCTGCTG GCAAAAAGCA GCGGCTGACC ATTGAGCGGC TGTCCGACGA CGGTCGCGGT
ATCGCCTTTC TCGAGGGTAA AACCTGGTTT GTCGCCGGTA GTCTGGCCGG CGAAGAGGTC
GAGGCGCGCG TGCTCAATGC GCGCGGCAAG GTCGTCGAGG CGCGCACCGA GCGGGTGTTC
ACTGCCAGCG CCATGCGTCG CGCTCCGGCC TGTGAGTATT TCGGTCGCTG CGGCGGCTGC
AGTGTTCAGC ATGTGCCCCA TGAGGAACAG CTTGCCCTGA AACAGCGCAT GCTCGCCGAG
CAGTTGCTGC GCGTGGCGAA CGTGGTGCCG GATGAATGGG CGGCACCTTT GAGTGGTGCC
GAGCTGGCCT ATCGCCGACG CGCGCGGGTC GCGGTTCGCT GGGATGCCAA GGCCAAAAGG
CTGGATGTGG GGTTCCGCGC AGCCGCCAGC CAGGACATCG TCAGCATCGA ACACTGTCCA
GTGCTGGTAC AAGCCTTGCA ACCGATCATG AATGAGTTGC CTGGCATGCT GAAAAGTTTC
AGCAAGCCGC AGGTGCTGGG TCACGTCGAG CTGTTCAGTG GGGTGGCGAC TGCCGTGTTG
TTGCGCCACA CCGCGTCGCT TGTCGAGGCC GACCTGGCGC TGTTGCAGGC GTTTTGCTCC
AGGCATGGCG CGCAGCTGTG GCTGCACGGC GAAGGCGAGC CGCAACCGGC CAGCCCCGGC
GATACGCTGG GCTACCGGCT GGAGCCGTGG AACCTGCAAC TGGCCTGGCG ACCGGGAGAT
TTCATTCAGG TCAACGCGTC GGTCAATACC GCGATGATCG AGCAGGCCCT GCAATGGCTG
GCGCCTGCAA AAGATGAGCG TGTCATGGAT CTGTTCTGTG GTCTGGGCAA TTTCGCCTTG
CCACTGGCGG GGCTGGCCAG GGACGTGGTG GCGGTCGAAG GCGTTGCGAC CATGGTCGAG
CGTGCAGCCG TCAACGCAAT GAGTAATGAT CTGCACAATG TGCGGTTTTT TCAGGCGGAT
CTTTCCCAGC CGCTGACACA GGCCGACTGG GCGGCAGAGG GGTTTTCTGC GGTACTCTTG
GACCCACCGC GTGACGGAGC CTTTGAAGTG GTCCGCCAGA TCAGAAAGAC GGGGGCCCGG
CGACTGCTTT ATGTTTCATG CAACCCGGCA ACTTTGGCTC GTGACGCGGT CGAACTGATC
CGTCAGGGCT ACCGATTAAA ACGTGCCGGA ATCCTCGATA TGTTTCCTCA GACGGCGCAT
GTCGAGGCGA TGGCTTTATT TGAAATGAGT AAGTGA
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| Protein sequence | MAKHERGLRF QPAGGVKTVQ IPAGKKQRLT IERLSDDGRG IAFLEGKTWF VAGSLAGEEV
EARVLNARGK VVEARTERVF TASAMRRAPA CEYFGRCGGC SVQHVPHEEQ LALKQRMLAE
QLLRVANVVP DEWAAPLSGA ELAYRRRARV AVRWDAKAKR LDVGFRAAAS QDIVSIEHCP
VLVQALQPIM NELPGMLKSF SKPQVLGHVE LFSGVATAVL LRHTASLVEA DLALLQAFCS
RHGAQLWLHG EGEPQPASPG DTLGYRLEPW NLQLAWRPGD FIQVNASVNT AMIEQALQWL
APAKDERVMD LFCGLGNFAL PLAGLARDVV AVEGVATMVE RAAVNAMSND LHNVRFFQAD
LSQPLTQADW AAEGFSAVLL DPPRDGAFEV VRQIRKTGAR RLLYVSCNPA TLARDAVELI
RQGYRLKRAG ILDMFPQTAH VEAMALFEMS K
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