| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3684 |
|---|
| Symbol | |
|---|
| ID | 3369219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | - |
|---|
| Start bp | 4370634 |
|---|
| End bp | 4371362 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637654043 |
|---|
| Product | NLP/P60 |
|---|
| Protein accession | YP_236754 |
|---|
| Protein GI | 66046913 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.49515 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00130241 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTTG TTCGCTTCGC ACCCCTCGTG CCTCTCGCAC TCGTTACATT TCTCTTCGGT
TGCTCGGCCA ATATGCCGGT CGCACAGCAG GAACAGGCCC AGCCAGTTCC ACGCTATCAG
AGCGCAATCA ATGCCAATGC CCAGTCCGCA GCCCGTCGCG CCGACGCGGC AGTCCTGCAG
GACGAGCTCG CTACCGAAGA CGAACTGTCC CAGTTCGCTG ATAACAAGTC TTACCAACTG
CCGGCCCTGG CCGACAGCAT CCTGGAGCGT GGCAAGTCGC TGATCGGCAC CCGCTACAAG
TTCGGCGGCA CGTCGACTTC TTCGGGTTTC GATTGCAGCG GCTTCATCGG TTATCTGTTT
CGCGAAGAGG CCGGCATGAG CCTGCCACGT TCCACGCGTG AAATGATCAA CGTCAACGCA
CCTCTGGTAG CGCGCAACAA GCTTCAGCCG GGTGATGTGC TGTTCTTCAG TACTCGCGGT
CGTGGTCAGG TCAGCCACGC AGCGATTTAC GCCGGTAATC GGCAGTTCAT CCACTCCAGC
AGTCGCCGCA GCGGCGGTGT GCGCATCGAC AGCCTCGATG ACGCCTACTG GAGCAAGACC
TTCATCGAGG CCAAGCGGCC TCTGGCGATG GCCCCGGGTA CTGTTGCAGT AAAATCGACA
CCTGAAGTCA CGCAGACAAC GGCGATGACT TCGACTACAG TCAAGACCGC GCCCAAGCGG
CGTAAATAA
|
|---|
| Protein sequence | MQVVRFAPLV PLALVTFLFG CSANMPVAQQ EQAQPVPRYQ SAINANAQSA ARRADAAVLQ
DELATEDELS QFADNKSYQL PALADSILER GKSLIGTRYK FGGTSTSSGF DCSGFIGYLF
REEAGMSLPR STREMINVNA PLVARNKLQP GDVLFFSTRG RGQVSHAAIY AGNRQFIHSS
SRRSGGVRID SLDDAYWSKT FIEAKRPLAM APGTVAVKST PEVTQTTAMT STTVKTAPKR
RK
|
|---|
| |