Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3549 |
Symbol | |
ID | 3369076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4226391 |
End bp | 4228802 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637653900 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_236619 |
Protein GI | 66046778 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.566467 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.27975 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCACG CTTCGCTGAA CCGTTTTCGT ACCGGGTTGC TCGCCTTGCT TTTGCTGTGC GTGACCTTGC CGGCCCTGGC CCAGAATGCC CCCGCTCCCC AGGCCGATAG TGCCAGCAGC GCAGCGCCTG CCGTGGAAGC CCCGAGCCTG GATGATCTGA ACCAACAGCT CGATCAGATC CGTCAGAAAG TGACGGTCAG CGCCAACGAC GACCTGCTTT CAAGCCTGCG CCAGGCGGCT TTGCAGGTCC AGAAACAAGC CGACAATCTG GTTGCGCAGC AGGCTGTCGA CATCGAACAC CTGAATGATC AGCTCAACAT TCTCGGGCCG GTGCAACCGG ACGAAGCGCC AAGCCTGACC AGTCAGCGCA AGACATTGAC CGCGCAGAAA AACGCGCTGG TCAATGATGA ACGGCAGACC AATGAGCTAA GTCAGTCAGC CCGGGATCTG GCTACGCAGA TATTCAACCT GCGCCGCAGC CTCTTCGATT CACAGATCAG CACGCGCACC GCGAGCCCGC TCAGTTCGGC ATTCTGGTCC ACGCTGATTC GCCCGACCGA TGACGACCTG GGACGGTTGA ACAGGCTTCT GGTGGACGTA CGCCAGGTAC TCAACAACGC GATGGCACCG GACAACCGTG TGCAATTCAT CAGCGTGGTG CTGGGCGCGT TGTTCATCTG GGTGGTTGTC CGGCGCCTGC TGGAGCGCCT GCTGATCTGG GCAATGATTC GCTGGCTGCC CGAAGGCCGT CTGCGCCGCA GTGCTCTGGC CCTGGCTGTC GGGCTGTCGA CCATTCTCAC CATCACCATT GCCACTTCCT TGCTGCGCTG GGGGATCGTC CACAACGCGG TACTCAGCAA CGACGTAGTC AATCTGCTCG ATCAGGTGCA GACGCTGATT ACCTTCTGCG CCTTCATCGT CGGTCTGGGC CGTGCGCTGT TGATGCTGGC ACACGCCTCG TGGCGCCTGC CGCAAATTCC TGACCAGATC GCCATCGCAT TGGGTCGCTT CCCCCCTGCC CTGGCGCTGG CACTGATGGT CATCGGCACG CAGGAACGAA TCAACAGCGT GATTGCCAGC AGCCTGGCCC TGACGGTTGC GGTCAATGGC CTGACGGCAC TGGCGGTTTC GCTGGTGTTC TTCTATGCCC TGTTGCGCTA CCGCCGCACC CGCCGACGCT TTGAGCTGGA GCGCCCGGCG GGCTTCGCCG GGCTGATTCC GTTTATCGTT GCGGTGTGGG TCGGCCTGAG TTTGCTGGCG TTGTTGAGCG GCTACCTGAC GCTGGCGTAC TTTCTGGCAG TGAAACTGCT CTGGGTGAGC GTGGTAGCGT CCACTGCATA CCTGCTGATC GCCTGCTTCG GTGACATCTG CGAAACCCTC TTGTCGCCCA AGCAACCCGG CGGCCTGGCG CTGGGTTCCG CGCTGGGCTT GTCCACGCGC CATCAGGCGC AGGCAAGTAC CGTGCTGGCC GGCATAGGCC GCACCTTGCT GCTGCTCACC GCTGTACTGC TGGCGTTCCT GCCTTCAGGG TCGAGCCCGG GCGACCTGCT CGCCAGCTTT ACTCAGCTGG ATGTCACCTC CAAATCCATG GGCAACCTGA ACATCGTCCC CGGCGACATT CTGGTAGCAC TGGTGTGCCT GGTCGTCGGC CTGCTGAGCG TGCGTGTCCT CAAGGAGTGG TTTGGAGAAC GCCTGCTGCC CGAAACCAAC ATGGACGCGG GCATGCAGGC CTCGCTGGTG ACCCTGATCG GATACATCGG CTTTGTGCTG GTGGTGGCCG TGGTGATGTC CACACTCAAC ATCAGCCTTA CCAACCTGAC CTGGGTGGTC AGTGCGCTGT CGGTGGGGAT AGGTTTCGGC CTGCAAGCCA TTGTGCAGAA CTTCATCTCC GGCCTGATTC TGCTGACCGA GCGTCCGGTC AAAGTCGGCG ACTGGGTAAG CCTGGCGGGG GTAGAAGGCG ATATTCGCCG GATCAACGTC CGCGCGACCG AAATCCAGAT GGGCGACCGC TCGACAGTGA TCGTGCCGAA CTCGCAATTC ATCACGCAGA ACGTGCGCAA CGTGACCATG GGCAACGCGC TGGGGGTGGT CGGAATCACC CTTACCCTGC CCCTGGAAAC AGACGTTCTG CAAATACGCG AACTGCTGTT GCAGGCCTTC ACCGAGCATG AAGCCATACT CGATGCGCCA GCGCCTTCAG TCACCTTCAA GGACTTGACC AATACCGGTT TGATCATCAG CGCCAGCGGC TACGTGAACA GCCCACGCTC TGTGGGTGGC GCACGGAGTG ATCTGTTGTT TACCGTTCTG GGGCGTCTGA GGGAATTGGG TGTTGCGCTG TCTGCACCGC AGAGCATGGT GTTGATCAAT GAGGGGGCTG GGAAGGAGGC GGCGGCGGAG GAGAGTCAGT GA
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Protein sequence | MQHASLNRFR TGLLALLLLC VTLPALAQNA PAPQADSASS AAPAVEAPSL DDLNQQLDQI RQKVTVSAND DLLSSLRQAA LQVQKQADNL VAQQAVDIEH LNDQLNILGP VQPDEAPSLT SQRKTLTAQK NALVNDERQT NELSQSARDL ATQIFNLRRS LFDSQISTRT ASPLSSAFWS TLIRPTDDDL GRLNRLLVDV RQVLNNAMAP DNRVQFISVV LGALFIWVVV RRLLERLLIW AMIRWLPEGR LRRSALALAV GLSTILTITI ATSLLRWGIV HNAVLSNDVV NLLDQVQTLI TFCAFIVGLG RALLMLAHAS WRLPQIPDQI AIALGRFPPA LALALMVIGT QERINSVIAS SLALTVAVNG LTALAVSLVF FYALLRYRRT RRRFELERPA GFAGLIPFIV AVWVGLSLLA LLSGYLTLAY FLAVKLLWVS VVASTAYLLI ACFGDICETL LSPKQPGGLA LGSALGLSTR HQAQASTVLA GIGRTLLLLT AVLLAFLPSG SSPGDLLASF TQLDVTSKSM GNLNIVPGDI LVALVCLVVG LLSVRVLKEW FGERLLPETN MDAGMQASLV TLIGYIGFVL VVAVVMSTLN ISLTNLTWVV SALSVGIGFG LQAIVQNFIS GLILLTERPV KVGDWVSLAG VEGDIRRINV RATEIQMGDR STVIVPNSQF ITQNVRNVTM GNALGVVGIT LTLPLETDVL QIRELLLQAF TEHEAILDAP APSVTFKDLT NTGLIISASG YVNSPRSVGG ARSDLLFTVL GRLRELGVAL SAPQSMVLIN EGAGKEAAAE ESQ
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