Gene Psyr_3398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3398 
Symbol 
ID3368925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp4055262 
End bp4056398 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content63% 
IMG OID637653749 
Productalanine racemase, N-terminal 
Protein accessionYP_236468 
Protein GI66046627 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3616] Predicted amino acid aldolase or racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000409999 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGCCT CCCTGTCTTC TCTCGATACG CCTGTCGCGC TGCTCGACGT GTCGCGCATG 
CAGCACAATA TCCAGCGCAT GCAACAACGC ATGAATGAAC TGGGCGTGCG CTTGCGCCCA
CACGTCAAGA CCAGCAAATG CCTGCCGGTC ATTCAGGCGC AGATTGCAGC GGGCGCCAGC
GGCGTCACGG TGTCGACATT AAAGGAGGCC GAGCACTGCT TTGCCGAAGG CATCGACGAC
GTGTTCTATG CCGTCGCCAT TGCACCCGGC AAGCTGGAGC AGGCACTCAG ACTGCGGCGC
AAGGGCTGCC GCCTGAGCAT CCTGACCGAT AGCGTAGCGG CGGCCCGGGC GATTGCGGTT
TTCGGCCAGG CGCATGACGA ACGTTTCGAC GTGTGGATTG AAATCGATTG CGACGGTCAT
CGCTCCGGGC TGACCGTCGA AGACCCCTCG CTGGTCGAGG TCGCGAGCAC GCTGGTCAAC
GGCGGCATGC AACTGCGTGG GGTAATGACC CATGCCGGGT CCAGTTATGA CCTCGACACC
CCCGCAGCCC TGCAAGCGCT CGCCGAACAG GAACGCAGGC TGTGCGTCAG CGCCGCCGAG
CGGATTCGCC AGGCAGGGCT GCCCTGTGCG GACGTCAGCA TCGGTTCGAC CCCGACGGCA
CTGTCGGCGC AGAGCCTGCA CGGCGTGACC GAAGTTCGCG CCGGGGTGTA TGTGTTCTTC
GATCTGGTGA TGCACAACAT TGGCGTATGC CGGGCAGATG AGCTGGCCCT GAGCGTGTTG
ACCACGGTCA TCGGCCATCA GCAGGACAAG GGCTGGATCA TCGTTGACGC AGGCTGGATG
GCCATGAGTC GCGACCGTGG CACTCAGCGC CAGCGTGAGG ATTTCGGCTA TGGCCAGGTG
TGCAACGAAA CTGGCGAGTG GATCGACGGT GCACGGGTCA CCGGTGCCAA TCAGGAGCAC
GGCATCATCA CGCTTGCTGC GGGCAGCGAG ACCGACATCA GCGAGCGTTT TCCCATCGGT
AGCCGGCTGC GCATTCTGCC CAATCACGCC TGTGCCACCG GCGCGCAATT CCCCGACTAC
CACGCCTGCG ACAGCGAAGG CGCAATCCAT ACCTGGAGTC GTCTGCATGG CTGGTGA
 
Protein sequence
MSASLSSLDT PVALLDVSRM QHNIQRMQQR MNELGVRLRP HVKTSKCLPV IQAQIAAGAS 
GVTVSTLKEA EHCFAEGIDD VFYAVAIAPG KLEQALRLRR KGCRLSILTD SVAAARAIAV
FGQAHDERFD VWIEIDCDGH RSGLTVEDPS LVEVASTLVN GGMQLRGVMT HAGSSYDLDT
PAALQALAEQ ERRLCVSAAE RIRQAGLPCA DVSIGSTPTA LSAQSLHGVT EVRAGVYVFF
DLVMHNIGVC RADELALSVL TTVIGHQQDK GWIIVDAGWM AMSRDRGTQR QREDFGYGQV
CNETGEWIDG ARVTGANQEH GIITLAAGSE TDISERFPIG SRLRILPNHA CATGAQFPDY
HACDSEGAIH TWSRLHGW