| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3081 |
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| Symbol | |
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| ID | 3368601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3686678 |
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| End bp | 3687811 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637653425 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_236151 |
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| Protein GI | 66046310 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000964041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTGA ATCCTGATGC GTTTCCTGCT CTACGGCGGT GTGTGTCACG CGCTTGCGGC
GTCGTACTGA TCACTCTGAT GATCAGTGGT TGCGGTGATA AACAGACGAC CAGTGCTTCG
CCTGTCCGGG CGGTCAAGGT TGAGACGGTG CGGGCAGGAG AGGGCGCTGC GTTACGCTTC
ATCGGCACTG TTCGAGAGCA GGAGCGCGCC AGTCTGGCGT TTGAATCGGC AGGCACCCTG
ACAGAGCTGC GGGTCGACAT TGGCGATAGC GTCAAGCCGG GCCAGGTGCT CGCCCGCCTT
GATCCGCAGC CTGCGCAATT GCGTCTGCAG GAGGCGCAGG CCGCTTTGCG GCTGGCTCGG
GCTCAGGCGC TGGAGCGCCA GCGTAACTAC CAGCGTCAGC AAAACCTGCT CGCAGCGGGC
AGTGTCGCCC AGAGCGTGGT CGAGTCGGCC CAGTCGTCCA GTGAACAAGC CAGCGCCGAG
CTGATCCGCA CGCAAGCCGA GCTGGACCTG GCCCGTCGCG AACTGGATCG CACCCGCTTG
ATCGCCCCCT TTGCCGGGCG CGTGGTGGCC CGTCATGCAC AACCGCAGAG CTTGTTGTCC
GCCGGGCAGG TGGTGCTGGA TGTCGAATCC GCTGCAGAGC AACAAGTGGT GGCAGCTGTT
CCGCTGGCAC TTGCCGATTC GCTTGAGCCT GGCGACCTCG CCAGGGCCTC GAACAGTGCA
GACGGTACGG CAGGGTTTGA TCTCGCCCTG GAAGGCATTT CGCCCCGAGC CGATGACGGG
CTGGTCAGAA CGGCCGTGTT CCGAGTGCTG CGGCCTGCCG GCAGGCTGCC CAGTGGCGTC
ACGCTGCTTG TGCAAATGCA TCCCGCTGCC GACGCACAGG CACTGTCGGT TCCGCTGCAA
GCTTTATGGA TGGGGACCGG CAGCCACCTT GCCGAAGTCT TCGTCTATCA GTCGGGAGGA
ACAGTCGCCG TCCGCTCTGT CACGCTGGGT ACGGTCAGAG AAGGCCGTGC ACTGATCGTC
AGCGGGCTGG TCGCAGGTGA GCAGGTGGTC ACTGCCGGCG CCGCCTTTCT GCAGGACGGC
CAGCCCGTCA CGCTGTTTCA TTCAGACACT CGCCTGACCG GTGCCGTGCA ATGA
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| Protein sequence | MRLNPDAFPA LRRCVSRACG VVLITLMISG CGDKQTTSAS PVRAVKVETV RAGEGAALRF
IGTVREQERA SLAFESAGTL TELRVDIGDS VKPGQVLARL DPQPAQLRLQ EAQAALRLAR
AQALERQRNY QRQQNLLAAG SVAQSVVESA QSSSEQASAE LIRTQAELDL ARRELDRTRL
IAPFAGRVVA RHAQPQSLLS AGQVVLDVES AAEQQVVAAV PLALADSLEP GDLARASNSA
DGTAGFDLAL EGISPRADDG LVRTAVFRVL RPAGRLPSGV TLLVQMHPAA DAQALSVPLQ
ALWMGTGSHL AEVFVYQSGG TVAVRSVTLG TVREGRALIV SGLVAGEQVV TAGAAFLQDG
QPVTLFHSDT RLTGAVQ
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