Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2953 |
Symbol | |
ID | 3368473 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 3541469 |
End bp | 3542302 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637653299 |
Product | catalytic LigB subunit of aromatic ring-opening dioxygenase |
Protein accession | YP_236025 |
Protein GI | 66046184 |
COG category | [S] Function unknown |
COG ID | [COG3384] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.66937 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACTT CATTCCCCCT GCTGTTTGTG TCTCATGGTG CTCCCACGTT CGCCATCGAG CCCGGCCTGG CAGGCCCGAG ACTGGCCAGG CTCGGTCGTG AGCTGCCAAA ACCTGATGCC ATCGTGGTTG TCTCGCCGCA CTGGATGACC CGTGGCGAAG TCAGGGTTAC GTCGAGCACA GCACCTGAAA CCATTCATGA CTTTGGTGGT TTTCCGGGCG CTTTGTATAC GTTGTCCTAC CCGGCTCCGG GCGCACCAGC GTTAGCGAGT CATATTGTTG AGCTGCTGCA GACGGCGGGC TGGCAATCGC GGCTCGATTC CGCCCGCGGC CTGGATCACG GTGCCTGGAT ACCACTTATG TATCTGGCAC CCGACGCAGA CATACCGGTC GTTCAGGTGT CCATGCCCGC CACGCTTGAT ACACGCAGCG CCTGGCAGCT CGGCGCAGCA CTCAAGCCAC TGCGTGAGAT GAACGTATTG ATCGTGGCGT CAGGCAGCCT CACCCACAAC CTGTACGAGT TCCGCGGCGC AACAAGCCAC GGCGCCGACT ACGTCAAACA GTTCGCAGCA TGGACCGCCC TGACCCTGCA GGCAGGAAAC ATTGATCAGT TGCTCGACTA CAAGCAGTAC GCACCTTCAG CCGAACGTGC ACATCCGACC GATGAGCATT TCCTGCCGCT GGTTATTGCG CTCGGGGCAG CTGGTCACGG TTATCAGACA CAGGTAATGG ACGGCGGTAT TACCCACGGC GTTCTGGCGA TGGACAGCTA CCTGTTTACC TCAATTGATA GCGAACGATT CGAGTCAGCT CAAACCGTTC AAGGTGTGAA ATAA
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Protein sequence | MNTSFPLLFV SHGAPTFAIE PGLAGPRLAR LGRELPKPDA IVVVSPHWMT RGEVRVTSST APETIHDFGG FPGALYTLSY PAPGAPALAS HIVELLQTAG WQSRLDSARG LDHGAWIPLM YLAPDADIPV VQVSMPATLD TRSAWQLGAA LKPLREMNVL IVASGSLTHN LYEFRGATSH GADYVKQFAA WTALTLQAGN IDQLLDYKQY APSAERAHPT DEHFLPLVIA LGAAGHGYQT QVMDGGITHG VLAMDSYLFT SIDSERFESA QTVQGVK
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