| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2606 |
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| Symbol | |
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| ID | 3368123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 3060225 |
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| End bp | 3061661 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637652954 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_235683 |
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| Protein GI | 66045842 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0037798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGATA GGCGCAGAAT GAACAGATCA ATTGGCCCCT GGCTGTTTAC GGCACTGTCC
TTGAGCGGCT GCTCGTTGAT TCCGGACTAT CAGCGCCCGG CGGCACCGGT TGCCGCGCAC
TACCCACAAT CCTCAGCCTA TGCGCCAGCA CTCTCTGGTC CGCTGGCGGC GGACATGGGC
TGGCGTGACC TGTTCCGCGA CCCGACGCTG CAACAGCTTA TCGAAAGCGC CCTGCTCAAC
AATCGTGACT TGCGCGTTGC AGCGCTCAAC GTCGAGGCCT ATCAAGCGCA ATACCGCATT
CAGCGCGCCG ATCTGTTTCC CGCGATCAGC GCCACAGGCA GCGGTACCCG GCAACGCCAG
CCCGCCAGTA TCACGCAGAC CGGCGGCCCG GTGACCAGCG GTACTTATTC GGCAACGCTG
GGTATCAGCT CTTACGAGCT GGATTTGTTC GGACGCATAC GCAGTCTCAG CGATCAGGCC
TCGCTCACCT ATTTGTCCAG CGAAGAGGCC CGGCGCAGCA CCCTACTAAG CCTGGTGGCG
AGTGTCGCCA CTGCCTACCT GACCTGGCGT GCCGACCAGG AGCTATTGGC CTTGACTCAG
GACACGCTGA TGTCCTACGA AAAGAGCCTG AAGCTGACCA CTCGCAGCCA GCAAGTCGGC
GCTTCTTCGT CACTGGACCT GGCCCAGTCG CGCACATCGG TGGAGAGCGC ACGGGCAAGT
CTGGCGACGT TCCAGCGCCA GGCCGCTCAG GACCTCAATA ACCTGACTTT ACTGGTGGGC
ACGGAGGTTG CGGACAGCGC GCCCAGCCGT CCGTTGTCCT CCGAATGGCT CGCTGAAGTG
CCGGCGGGGC TGCCTTCTGA TCTGCTGCAA CGACGCCCGG ACATTCTTGA AGCCGAATAC
CAGTTGCAGT CGGCCAACGC CAGCATCGGT GCTGCGCGAG CGGCATTCTT CCCGAGCATT
ACCCTGACGG CCAACGCCGG TACATCCAGC ACCGAACTGT CCGGCTTGTT CAAAGGCGGT
TCGGGAGGCT GGGTGTTTTC ACCGCAGATC GATATCCCGA TTTTCAACGC CGGCAGTCTG
CGAGCGAGCC TGGATTATTC GAAAATCCAG AAGGATATAA GCGTTTCTAA GTACGAAAAA
TCGATACAGA CCGCCTTTCA GGAGGTCGCC GATGGTCTGG CAGCGCGTCA GACCTACAAG
CATCAGCTGA AGGCGCAGAG CGATCTTGTA CAGGCCAACC AGGAGTATTA CCGCCTTGCC
GAACGACGTT ACCGCATTGG CGTCGACAGC AGCCTGACAC TCCTCGACGC CCAACGCTCT
TTATTCAGCG CTCAACAAAC CCTGATCACC GACCGACTGT CGCAACTGAC CGCCGAAGTC
AATCTCTACA AGGCGCTGGG CGGCGGTTGG ACAGAGCGTA CATCAACACC TTTGTGA
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| Protein sequence | MDDRRRMNRS IGPWLFTALS LSGCSLIPDY QRPAAPVAAH YPQSSAYAPA LSGPLAADMG
WRDLFRDPTL QQLIESALLN NRDLRVAALN VEAYQAQYRI QRADLFPAIS ATGSGTRQRQ
PASITQTGGP VTSGTYSATL GISSYELDLF GRIRSLSDQA SLTYLSSEEA RRSTLLSLVA
SVATAYLTWR ADQELLALTQ DTLMSYEKSL KLTTRSQQVG ASSSLDLAQS RTSVESARAS
LATFQRQAAQ DLNNLTLLVG TEVADSAPSR PLSSEWLAEV PAGLPSDLLQ RRPDILEAEY
QLQSANASIG AARAAFFPSI TLTANAGTSS TELSGLFKGG SGGWVFSPQI DIPIFNAGSL
RASLDYSKIQ KDISVSKYEK SIQTAFQEVA DGLAARQTYK HQLKAQSDLV QANQEYYRLA
ERRYRIGVDS SLTLLDAQRS LFSAQQTLIT DRLSQLTAEV NLYKALGGGW TERTSTPL
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