| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2597 |
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| Symbol | |
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| ID | 3368114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 3043718 |
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| End bp | 3045322 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637652945 |
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| Product | GGDEF |
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| Protein accession | YP_235674 |
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| Protein GI | 66045833 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.036812 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTCC TGCGCAGCCC ACACATGGTT CGTAAGTACC TTTACACCGT ATTGTGGTTT
TATGTGCTCT CTATTTTCCT GTTGGCAATC GCGTGGGAAT TCGAACTTGA ATCCCTCGCC
ATGGCCGCAA TGGGCTTGCC CTATGACCAG GACTTCGAAA ATGCCGAGCG TTGGCGTTTT
GTATTGACCT CGACAGGCTT TGCCGTGTTA TCGATGGTGA TACCGTTCAT TCTTCTGAAA
CGCCTGATGC AACAACTCCA TAGCAGCTAC AACGACTTGC TCGAGTCACA GGCGCTCAGC
GAATCTCTGG CCCGCCACGA TCCATTGTCC GGCTTGCTCA ATCGGCGTGT GTTTCACGAG
CAACTGGTTG CGCGGTTGCA GCAACCAGCG ACACAGACGG CGGTTTTTCT GATCGACCTG
GATAAATTCA AGCTGATCAA CGATACCCAC GGGCATGCGG CAGGAGACGC GGCTATTTGC
GCCGTTGCCG AAAGCCTGCG CGACGCCACT GTCGGGTGGC AGGCTTCCGT GGCTCGACTG
GGCGGCGACG AGTTCGGTCT GGCGGTCAGT GGTGACTTCA GTCATGCCGA ACTGGCGCCG
CTCGCTGAAA ACATTCTGGC CAAAATCGCA GCATCCAGCG TTGGCCTGCC GCGTGTGGCC
CTGAGTGCGA CCCTCGGCAT TGCCATTGCG CCAATGGACG GCTCAGACCC CGACCTCTTG
CTGCAACGTG CGGACAGCGC CATGTACCGC GGTAAAGCCG GTGGCCGAGC CAGGTTTCAT
TTCTATGAAG TCAGCTTCGA GCGCGAGCAG CGTCTGCAGG AGCAGTTCGC GCGCGAACTC
ACCCTGGCTA TCGAAGAGAA AGATATTCAA CCGTTCTATC AGCCTATCGT CAGCCTTCCC
GAGCAACGCC TGGCGGGGTT CGAACTGCTG GCGCGATGGC TGCATCCCGA GCGCGGGATC
ATCCTGCCGC TTGACTTCAT TCCTGTGGCG GAACAGTTGG GGCTGATCAA ACCACTCACC
GCGACCCTTT TGCTTCAAGC CTTCGATCAG GCACGCGATT GGCCAAGCGA CTTTACGCTG
GCGATCAACG TTACCTCACT GATGATCGAA AGCCCCGACT TTCCTGACTG GCTGGAACAG
CTGGCCAATG AAGGGAAATT TCCGCTGAGT CGGCTGGAAG TGGAAGTGAC GGAAAACGCA
CTGGTCGCCA ATGTCGACAG TGCCCGCCTG AATCTGGAGC GTCTGCGCGC GATGGGCGTG
AGCGTCGCTC TGGACGATTT CGGTACCGGC TATTCAGGTC TTTATCATCT GACCAGGCTG
GCCATCGACA AAATCAAGAT CGACAGATCG TTCTTCGACA CGGCGCTTGA GAACCAGAAC
GAGATGGTCA AGGCCATCCT CGCTCTGGGT AAAAGCCTGC GCATGAAAAT CACCGCCGAG
GGCGTTGAGC ACGAACGGCT CGCAGACTGG CTGGCCACCC ATGAGTGCGA CTTTGCCCAA
GGCTACCTGT TCGGACGACC GTTGCCGTTG GCCCAGGTGA AAGAGCTACT GGCAATGAGT
GGTTCCGAAG GGCCGGTGAG GGCATTGGCG GTTCCTGGAA AATAA
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| Protein sequence | MTFLRSPHMV RKYLYTVLWF YVLSIFLLAI AWEFELESLA MAAMGLPYDQ DFENAERWRF
VLTSTGFAVL SMVIPFILLK RLMQQLHSSY NDLLESQALS ESLARHDPLS GLLNRRVFHE
QLVARLQQPA TQTAVFLIDL DKFKLINDTH GHAAGDAAIC AVAESLRDAT VGWQASVARL
GGDEFGLAVS GDFSHAELAP LAENILAKIA ASSVGLPRVA LSATLGIAIA PMDGSDPDLL
LQRADSAMYR GKAGGRARFH FYEVSFEREQ RLQEQFAREL TLAIEEKDIQ PFYQPIVSLP
EQRLAGFELL ARWLHPERGI ILPLDFIPVA EQLGLIKPLT ATLLLQAFDQ ARDWPSDFTL
AINVTSLMIE SPDFPDWLEQ LANEGKFPLS RLEVEVTENA LVANVDSARL NLERLRAMGV
SVALDDFGTG YSGLYHLTRL AIDKIKIDRS FFDTALENQN EMVKAILALG KSLRMKITAE
GVEHERLADW LATHECDFAQ GYLFGRPLPL AQVKELLAMS GSEGPVRALA VPGK
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