Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2322 |
Symbol | |
ID | 3367837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 2698342 |
End bp | 2701083 |
Gene Length | 2742 bp |
Protein Length | 913 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637652669 |
Product | YD repeat-containing protein |
Protein accession | YP_235400 |
Protein GI | 66045559 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.330208 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTTT CTTTCTTGCG GAAGGCTGCA GTAGGTATTG CCTGCGCCTG GCTGGCATGT TCTGCCCAGG CCGGCACGAT CAGCCGAACC TATACAGCGC TTGGGCAGGT CGCAAGTATC GATGGTGCGC GTACTGACGT GAATGACGTC ACTCAGTACG CATACGATGC TCAAGGCAAC CTTACTACTG TGACCAACGC GCTGGGTCAG GTCTATGCGC TTGCCAGTTT TGACAGTTAC GGCAATCCAC AAAGCATCAC CGACCCAAAC GGGGTGATGA CAACGCTCAG CTACACCCCG CAAGGCTGGC TTGCGAGCCT TACGATTGAC TCGTCGACGA CTCAGTATGC CTACAACGAA GTTGGTGATC TGTTGCAGGT CACCACCGCT GATGGCAACT GGGTCAAGTA CAGCTATGAC GATGCCCGCA GGCTTATCGG TGTGCGTAAT CGGCTTGGCG AGAGTATCAA TTACACCCTC GACCCAATGG GTAACCGGAC GGCAGAGCGG ACCAAAGACG CTAATGGAGC CGTGGTCCAT CTTCAGCGTC GAGTATTTGA TGAATTAGGT CGTCTGATCC GGGTAGTGGG TGCTGGTGAT CAGACGCAGC GTTATGGCTA TGACCTGAAC GACAATCAGT CGAGTGATAC CACGCCGCGT AATAACAAAA CGCAGCAGGC GTTCGATGCT CTGAATAGGG TCAGCAAGAT TGTCGATCCT TTGCAGGGCG TGACTGCCTT GGGTTACAAC TCGGATGACA AGGTCACCAA AGTGGTTGAC CCTCGTGGCG TGACGACGCT GTACACCTAC GACAGTCTAG GAAACCGGAT CAGTAGCAAA AGCCCTGATG GTGGGACCAG CACTTACGCC TACGACGAGG CCAACAATCT CATTCGCAGC ACTGATGCAC GTGGGGTTGT GACCGAGTAC GCCTACGATG CGCTCAATCG CCTGACCAGC AAAAGCTATC CCGCCACACC TGCGCTCAAT ATCAAGTTTC TCTACGACCA GACCGCTGAT GGCAATCTCG GGATTGGCCA CCTGACAGGG CTACAGGACA GCGCTGGTGT TCTGACGTAT ACCTACGACG CCAAGGGCAA TCTGGTCAGG CAGCACCGCT CGGTGGGCGT CAACAGCGGT GACTATTACG AAACACTGAA TTACGGTTAT GACGCCGCCC GTAATCTGGT GCAGATTGGC TATCCATCGA ATATCAACTT GACCTTCACC CGCAATAGCG CGGCACAGGT AACAGGCGTC AAACTGGCCA TTGGCAACAA GACAGCGACG CTGGCAAGTA ACATTTCCTA CCAGCCATTC GGCCCAGTTA ATTCGCTGAC CTGGGGCAAC GGTATCCTGC TGTCGAGAAC CTATGACCAG GATTATCAAC TGACCCAGCA GCAGGTCGGT AACTGGCAGA CGACTTATCG TTACGACGCT GACAGCAACA TTTCCGAAAC GGCCACCAGC CTGTGGGGCG CGGTCCAGTA TGAATATGAT GCGCTGGGCC GTCTGACTCA GGAGCAAACC AACAGCGTCA AAAAGGCTTA CAGCTTCGAC GCTACGGGCA ACAGGACTCA GCGTACCACC ACCAATCTGA CCACAAGCGA TGCCACTGAG ACTCAGTCTT TAACCTATGC CAGCGACAGT AACCGGGTGA CCAGCATTAA TGGCTCCACA CTGCCTGTGG ACGCTGCGGG TAACCACACG CAGATCAATG GCCGTCGATT CACCTACGAC AGCCAAGGCC GTCTGAGCGA GGTTTATCAG GCAAACATCT ACAAAATTGC CGACTACAAG TACAACGCGC TTGGCCAGCG AATCATCAAG CGCGCTTACG TGATGGGAAG CCAGGCGTTG GCGGGCACAA CCACCTACCT TTACGACCCG AGTGGCAAAC TGATCGGCCA AACGTTATAT GACGGAAACG GCCAGAAAAC CAGCGGCCAA TACTGGTTCT GGCTGGACAA CATGCCACTG GCACAGTTGA CAGCCAACTT CTCCACGCTG GGCGAGGTAA GCAGCAGCAA ACTGATTTAC CTGCATGTCG ATCACCTGAA CACGCCAAGA CTGGCAACAG ACAGTTCTCA GGCGCTGCTA TGGCGTTGGA ACAGCGATGC GTATGGAGTC GGATCACCCG AGGAAGATGT GGACGGTGAT GGCAAGGCCA CAACCATCGC GCTGCGGTTT CCGGGACAGA TTTACGATGC GCAAACGCAG CTGAGTTATA ACTATTATCG GGATTACAAT CCGGACACTG GGCGGTATGT GCAGAGTGAT CCGATTGGGT TGGGGGGCGG TCTCAATACA TATGCTTATG TTAATGCCAA TCCTATGTCA TTTATTGATC CTATGGGGTT AGCGGCAACT GCATTACCAA CTTGGTTTGA TAGTATTCCA GATCTGATAC CCCAAGTTGG GAGAGGTGTT GGCTTAGGCT TTGGTGCTGG GGTGTCATGC TTACTTTACT CACCCACGTT AGGAAACGGT GAGTGCCCTC CAGGTGGTTG CTATTATAGT GAGTCAGCAG AAAACAGTGC TGATCAACCC GACGAGAACA ATTTAGATAA ATTGAGTAGC AATAAAGCTG CAGATGCTGC GGCCCGAGAA GCTGGGTACG AAGATGCTCA CGATGCCAAA AAGGGCGAGG GTGATTCAAA AGTAAATATA TACAACGATA AAACTACGGG CTTTAAATGG CTTTGGAATG GAAAAAGCGG ATCGAGTAAA AACCCATTAT GA
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Protein sequence | MTVSFLRKAA VGIACAWLAC SAQAGTISRT YTALGQVASI DGARTDVNDV TQYAYDAQGN LTTVTNALGQ VYALASFDSY GNPQSITDPN GVMTTLSYTP QGWLASLTID SSTTQYAYNE VGDLLQVTTA DGNWVKYSYD DARRLIGVRN RLGESINYTL DPMGNRTAER TKDANGAVVH LQRRVFDELG RLIRVVGAGD QTQRYGYDLN DNQSSDTTPR NNKTQQAFDA LNRVSKIVDP LQGVTALGYN SDDKVTKVVD PRGVTTLYTY DSLGNRISSK SPDGGTSTYA YDEANNLIRS TDARGVVTEY AYDALNRLTS KSYPATPALN IKFLYDQTAD GNLGIGHLTG LQDSAGVLTY TYDAKGNLVR QHRSVGVNSG DYYETLNYGY DAARNLVQIG YPSNINLTFT RNSAAQVTGV KLAIGNKTAT LASNISYQPF GPVNSLTWGN GILLSRTYDQ DYQLTQQQVG NWQTTYRYDA DSNISETATS LWGAVQYEYD ALGRLTQEQT NSVKKAYSFD ATGNRTQRTT TNLTTSDATE TQSLTYASDS NRVTSINGST LPVDAAGNHT QINGRRFTYD SQGRLSEVYQ ANIYKIADYK YNALGQRIIK RAYVMGSQAL AGTTTYLYDP SGKLIGQTLY DGNGQKTSGQ YWFWLDNMPL AQLTANFSTL GEVSSSKLIY LHVDHLNTPR LATDSSQALL WRWNSDAYGV GSPEEDVDGD GKATTIALRF PGQIYDAQTQ LSYNYYRDYN PDTGRYVQSD PIGLGGGLNT YAYVNANPMS FIDPMGLAAT ALPTWFDSIP DLIPQVGRGV GLGFGAGVSC LLYSPTLGNG ECPPGGCYYS ESAENSADQP DENNLDKLSS NKAADAAARE AGYEDAHDAK KGEGDSKVNI YNDKTTGFKW LWNGKSGSSK NPL
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