| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2282 |
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| Symbol | |
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| ID | 3367797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 2650482 |
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| End bp | 2653625 |
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| Gene Length | 3144 bp |
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| Protein Length | 1047 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637652632 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_235363 |
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| Protein GI | 66045522 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0161777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTCTCT TCTTTATCAA GCGCCCCAAC TTCGCCTGGG TACTCGCCCT GTTCATCCTG
CTCGCCGGGC TGATGGCGCT GCCGTCCCTG CCCGTGGCGC AGTATCCGGA CGTGGCGCCA
CCGCAGATCA CCATCACCGC GACCTACCCC GGCGCATCCG CGAAAGTGCT GGTCGATTCG
GTGACCAGCG TTATCGAGGA CGAGCTCAAC GGTGCCAAGG GGATGCTGTA TTACGAGTCG
ACCAGCAACT CGACCGGCAG CGCGGAAATC AACGTGACGT TCGTGCCGGG CACCAACCCG
GACCTGGCTC AGGTCGAGGT GCAGAACCGT ATCAAGAAAG CCGAAGCGCG CCTGCCGCAG
ACGGTCCTCA GCCAGGGCCT GCAGGTCGAA CAGGCCAGCT CCGGTTTTCT GTTGATCTAC
ACCCTGAACT ACAAGGACGG CGCGGCCAGC AAGGATACTG TCGCGCTGGC CGACTACGCG
GCACGCAACG TCAATAACGA AATCAGCCGG GTGAACGGTG TCGGCAGGCT GCAATTCTTC
GCCGCCGAAG CCGCGATGCG GGTCTGGATC GATCCGCAGA AGCTGGTGGG CTTCGGCTTG
TCCATCGACG ACGTGAATGC CGCCATCCGG GCGCAGAACG TGCAGGTTCC GGCAGGCAGC
TTCGGTAGCA GCCCAGCCTC GTCACTGCAG GAATTGACGG CGACCCTGGC GGTCAAGGGC
ACGCTGGACA ACCCGGAAGA GTTCGGGCGC ATCGTTCTGC GTGCCAACGA AGACGGCTCT
GCGGTGCACC TGTCCGATGT GGCGCGTGTG GCGGTCGGCA GCCAGGATTA CAGCTTCGAA
TCACGCCTGA ACGGGCAACG CGCCGTCGCC GGTGCCGTGC AACTGTCGCC GGGTGCCAAC
GCGATCCAGA CGGCCAGAGC CGTCGAGCAG CGGCTCACCG AGCTATCGGT CAATTTCCCG
GAAGGCGTCG GGTTTTCGAT ACCGTACGAC ACCTCGCGCT TCGTCGACGT GGCCATCGAC
AAGGTCATCT ACACCCTCAT CGAAGCCATG GTGCTGGTGT TTCTGGTGAT GTTCCTGTTT
CTGCAAAACA TCCGTTACAC GCTGATCCCG ACCATCGTGG TCCCGGTGTG TCTGGCAGGG
ACACTGGCGA TCATGTACCT GATGGGCTTC TCGGTGAACA TGATGACCAT GTTCGGCATG
GTGCTGGCCA TCGGTATTCT GGTCGACGAC GCCATTGTGG TGGTGGAGAA CGTCGAGCGG
ATCATGGCTG AAGAAGGCCT CTCTCCCGCC GCCGCCACGG TCAAGGCGAT GCAGCAGGTT
TCCGGAGCGA TTTTCGGCAT CACGCTGGTC CTGGCCGCCG TGTTTCTGCC ACTGGCGTTC
ATGGGCGGCT CGGTCGGGGT CATCTACCAG CAGTTCTCGC TGTCGCTGGC CGTGTCGATT
CTGTTTTCGG GTTTCCTGGC CCTGACGTTC ACCCCGGCGC TGTGTGCCAC GCTGCTCAAG
CCGATCCCGG CCGGGCACCA TGAAAAGCGT GGTTTCTTCG GTGGTTTCAA TCGTCTGTTC
GGCAAGTTCA CCCACCGTTA CGAGCGCGTC AGTTCCAGCA TGATCAAGCG CGCCGGACGC
TACATGCTGC TGTACGTCGG TATCGTCGGT CTGCTGGGCT TTTTCTACCT GCGCCTGCCG
GAGTCCTTTG TACCCGTGGA AGATCAGGGC TATCTGATCA TCGACGTGCA ACTGCCTCCC
GGTGCCACCC GGTCGCGTAC CGACCTCACC GCGCAATTGC TCGAGAACTA CATGCTGTCC
CGTGAAGCCA CGGGCGCGGT GACCATGCTG CTGGGGTTCA GCTTCTCGGG CATGGGTGAA
AACGCCGGTC TTGCGTTCCC GACCCTGAAG GACTGGTCGG AGCGCGCCAA GGGCCAGTCG
GCGGCTGAAG AAGCGGTGGC GTTCAACCAG CATTTTGCCG GGCTTGGCGA CGGCACGGTG
ATGGCGGTAA CGCCACCGCC CATCGACGGC CTGGGCACCT CGGGCGGTTT CTCGCTGCGT
CTGCAGGACC GCGCTGGCCT GGGCCGTGAA GCCTTGCTGG CGGCACGCGA CAAGCTGCTC
GGCGAGGCCA ACGGCAATCC GAAGATCCTC TACGCGATGA TGGAAGGTCT GGCCGAAGCG
CCGCAATTGC GCCTGAGCAT CGACCGCGAA AAAGCCCGGG CGCTTGGCGT GAGTTTCGAG
TCGATCAACA ACGCCCTGTC CACCGCCTTC GGATCCTCGG TGATCAGTGA CTTTGCCAAT
GCCGGACGTC AGCAGCGCGT GGTCGTGCAG GCCGAGCAAA GTGCGCGAAT GACCCCGGAA
AGCGTGCTCA AACTCTACGT GCCCAATAGC AGCGGCACGC TGGTGCCGTT GGGTGCCTTT
GTTTCGACGC ACTGGGAACA AGGCCCGGTG CAGATCGCCC GCTACAACGG CTACCCCGCG
TTCAGGATTT CCGGCGACGC AGCGCCGGGG GTCAGTACCG GCGAGGCCAT GGCGGAAATC
GAACGGATCG TTTCCAAGCT GCCGCAAGGC ATCGGTTACG AATGGACCGG CCTCTCCTAT
CAGGAAAGAG TCGCCAGCGG CCAGGCGGCC GGACTGTTCG GCCTGGCGCT GCTGGTGGTG
TTTCTGCTGC TGGTCGCACT GTATGAGAGC TGGGCGATCC CGCTGGTGGT GATGCTGATC
GTACCCGTCG GCGCGTTGGG TTCCGTGCTG GCCGTGACAG CCGTGGGCAT GCCCAACGAT
GTGTATTTCA AAGTCGGCCT GATCACCATC ATCGGGCTGG CGGCGAAAAA CGCGATTCTC
ATCGTCGAGT TCGCCAAGGA GCTGTGGGAT CAGGGCCATT CACTGCGCGA CGCGGCGCTT
CAGGCTGCGC GACTGCGCTT TCGGCCGATT GTCATGACCT CGCTGGCCTT CATCCTTGGC
GTGGTGCCGC TGACCCTGGC TACCGGCGCG GGGGCGGCGA GCCAGCGCGC CATCGGCACC
GGCGTCATCG GCGGCATGCT CAGCGCGACG CTGCTGGGCG TGGTTCTGGT GCCGATATTC
TTCGTCTGGG TCCTGTCCGT GCTGCGCCGC AAACCGCATG CGCAACAGGC TAACGAAGAC
CAGCAGCTGC CTGAGAAGCG CTAG
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| Protein sequence | MSLFFIKRPN FAWVLALFIL LAGLMALPSL PVAQYPDVAP PQITITATYP GASAKVLVDS
VTSVIEDELN GAKGMLYYES TSNSTGSAEI NVTFVPGTNP DLAQVEVQNR IKKAEARLPQ
TVLSQGLQVE QASSGFLLIY TLNYKDGAAS KDTVALADYA ARNVNNEISR VNGVGRLQFF
AAEAAMRVWI DPQKLVGFGL SIDDVNAAIR AQNVQVPAGS FGSSPASSLQ ELTATLAVKG
TLDNPEEFGR IVLRANEDGS AVHLSDVARV AVGSQDYSFE SRLNGQRAVA GAVQLSPGAN
AIQTARAVEQ RLTELSVNFP EGVGFSIPYD TSRFVDVAID KVIYTLIEAM VLVFLVMFLF
LQNIRYTLIP TIVVPVCLAG TLAIMYLMGF SVNMMTMFGM VLAIGILVDD AIVVVENVER
IMAEEGLSPA AATVKAMQQV SGAIFGITLV LAAVFLPLAF MGGSVGVIYQ QFSLSLAVSI
LFSGFLALTF TPALCATLLK PIPAGHHEKR GFFGGFNRLF GKFTHRYERV SSSMIKRAGR
YMLLYVGIVG LLGFFYLRLP ESFVPVEDQG YLIIDVQLPP GATRSRTDLT AQLLENYMLS
REATGAVTML LGFSFSGMGE NAGLAFPTLK DWSERAKGQS AAEEAVAFNQ HFAGLGDGTV
MAVTPPPIDG LGTSGGFSLR LQDRAGLGRE ALLAARDKLL GEANGNPKIL YAMMEGLAEA
PQLRLSIDRE KARALGVSFE SINNALSTAF GSSVISDFAN AGRQQRVVVQ AEQSARMTPE
SVLKLYVPNS SGTLVPLGAF VSTHWEQGPV QIARYNGYPA FRISGDAAPG VSTGEAMAEI
ERIVSKLPQG IGYEWTGLSY QERVASGQAA GLFGLALLVV FLLLVALYES WAIPLVVMLI
VPVGALGSVL AVTAVGMPND VYFKVGLITI IGLAAKNAIL IVEFAKELWD QGHSLRDAAL
QAARLRFRPI VMTSLAFILG VVPLTLATGA GAASQRAIGT GVIGGMLSAT LLGVVLVPIF
FVWVLSVLRR KPHAQQANED QQLPEKR
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