Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2244 |
Symbol | |
ID | 3367759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 2608140 |
End bp | 2610110 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637652594 |
Product | DNA topoisomerase III |
Protein accession | YP_235325 |
Protein GI | 66045484 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.275193 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.433607 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCTGT TTCTCTGCGA AAAACCCTCC CAGGCCAAAG ATATTGCGGC TGCGCTCGGC GCAACCCGGC GTGGCGACGG CTGCTGGGTG GGTGCCAATG CGACGGTAAC CTGGTGCATC GGCCACCTGC TGGAAACCGC CCCGCCCGAT GCCTACGATG CACGTTACAA ACGCTGGGTA CTGGAAGACC TGCCCATCGT GCCGGAAAAA TGGAAGATGC TGGTCAAGCC CAGAACCGCC AGCCAGTTCA AGGCAGTCAA GCGGCTGCTG GGTGAAGCGA CGGAGCTGGT GATTGCCACC GACGCCGACC GTGAGGGTGA AATGATCGCC CGCGAACTGA TCGAGCACTG TCGCTATCGC GGGCCGATTC AGCGTTTGTG GCTGTCGGCA CTGGATGACG CCTCGATCCG CAAGGCACTG GCGGCGCTCA AGCCCGGTGC CGATACGTTC AGCCTGTATC ACTCGGCACT GGGCCGATCA CGTGCCGACT GGCTGATCGG CATGAACATG AGCCGCCTGT TCACCCTGCT GGGTCGGCAA TCCGGTTATC AGGGCGTCCT TCCGGTCGGC CGGGTACAAA CCCCGACCCT GCGACTGGTG GTGGACCGTG ATCGCAGTAT CGCCAACTTT GTCCCGGCGC CCTATTGGGC TATCGACGTC AGGCTGCTGC ATGACAATCA GGCGTTCATT GCCCAGTGGC GCGCACCCTC GGATGCCTGC GACGATCAGG ACCGCTGCCT GAATCAGGCG CTGGCGCAAC AGGCTGCGCA AGCGATGCGC GCCGCAGCCA GCGCACGGCT GGTCAAGCTG CGCACCGAGC GCATTCGCGA AGCGGCGCCC TTGCCGTTCG ACCTGGGCAC CCTGCAGGAA ATCTGCTCGA AAAAGCTCGG GCTCGGCGCG CAGGAAACCC TGGACATCGC CCAGTCCCTG TATGAAACCC ACAAGGTCAT CACCTACCCG CGCAGCGATT GCGGATACCT GCCGAACAGT CAGCACGGTG AAGCCGCAGG CATCATCGCG GCGCTGTGCA AGGCCGACCC TGCGCTGGCA AACCTGTCGC CGCACCTCGA CCCACAACGT CGGTCACGGG CCTGGAATGA CAGCAAAGTG ACGGCCCACC ACGGCATCAT TCCCACCGCA GCTGTACGCG GCGTAGAACG TCTGAGCGGT AAACCGCGAG CGGTGTACAC CCTGATCAGG GCGCGTTATC TGGCTCAGTT TCTGCCCAAC CATGAATACG ACCGCACCCA GGCCGATTTC GACTGTGCAG GCCACGCGCT GCGTGCGGTG GGCAAGCAGA TTGTCGAGCC GGGCTGGAAG CGTGCAATGC CCGAAGCGCT GGCCCCGGCC AAGGGTCGCG AAGCGCCTGC CCCGCAGCCG TTGCCGGCAT TGTTTCAGGG CTGCGAGTGT GCAGTCGCCG AGGTCATCCT CAAGGACCTC TGGACCCAGC CGCCCAAGCC GTTCACCGAG GGAGACCTGA TCAAGGCGAT GAAGAACGTC GCCAAACTGG TGGAAGACCC GCTGCTCAAA CAGAAGCTCA AGGACACCAC CGGCATCGGC ACCGAAGCCA CCCGCGCCGG GATCATTCAA GGCCTGCTGG ACCGTGGCTA CCTGACCAAG CAGGGCAAGT CGCTGTGCGC AGCTCCGGCA GCCTTCAGCC TGATCGACGC CGTGCCCCGT GCCATCGCCG ATCCGGGCAC CACCGCCATC TGGGAACAGG CGCTGGACAT GGTCCAGAGC GGCGAAATGA GCCTTGAAGA GTTCGTCGCC AAACAGGCGG CGTGGATGAG CAAACAGGTG AGCCGTTGCG TCGGCATGCG TATGAGCATC AGCGGACCGG CCAGCCCGGC AGGCGTTAAA CCGCCCTGGA AGAAAAAACG CAAGACCACA ACGCGCGTCG CCAAGACCGC CACAACGGAC ACTGCGGCGA AAAAGCCGCG GCGTGCTGTC AGACCGGCCG CCAAGGCGTA G
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Protein sequence | MRLFLCEKPS QAKDIAAALG ATRRGDGCWV GANATVTWCI GHLLETAPPD AYDARYKRWV LEDLPIVPEK WKMLVKPRTA SQFKAVKRLL GEATELVIAT DADREGEMIA RELIEHCRYR GPIQRLWLSA LDDASIRKAL AALKPGADTF SLYHSALGRS RADWLIGMNM SRLFTLLGRQ SGYQGVLPVG RVQTPTLRLV VDRDRSIANF VPAPYWAIDV RLLHDNQAFI AQWRAPSDAC DDQDRCLNQA LAQQAAQAMR AAASARLVKL RTERIREAAP LPFDLGTLQE ICSKKLGLGA QETLDIAQSL YETHKVITYP RSDCGYLPNS QHGEAAGIIA ALCKADPALA NLSPHLDPQR RSRAWNDSKV TAHHGIIPTA AVRGVERLSG KPRAVYTLIR ARYLAQFLPN HEYDRTQADF DCAGHALRAV GKQIVEPGWK RAMPEALAPA KGREAPAPQP LPALFQGCEC AVAEVILKDL WTQPPKPFTE GDLIKAMKNV AKLVEDPLLK QKLKDTTGIG TEATRAGIIQ GLLDRGYLTK QGKSLCAAPA AFSLIDAVPR AIADPGTTAI WEQALDMVQS GEMSLEEFVA KQAAWMSKQV SRCVGMRMSI SGPASPAGVK PPWKKKRKTT TRVAKTATTD TAAKKPRRAV RPAAKA
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