| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2055 |
|---|
| Symbol | |
|---|
| ID | 3367569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2401167 |
|---|
| End bp | 2403176 |
|---|
| Gene Length | 2010 bp |
|---|
| Protein Length | 669 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637652404 |
|---|
| Product | transglutaminase-like |
|---|
| Protein accession | YP_235136 |
|---|
| Protein GI | 66045295 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.323806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.622642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACA AGGTCAAGGC AGTTCCCGCC GCGCCCATTC CGCGTGTCAG CCTGACCTGG
CTGCTGGTGG CGCAGGCACT GGTGGTGTTG CCGTTCGCGT TGCATGTCCC GATGTCGATC
ATGATCCTCT GGCTGGGCTG CACGGTGTGG CGCGTTCAAG CGTTCCGCAT GCGCGTGCGC
TTGCCTGGCA CCTGGGTCAA GTCCGGGCTG CTGGTGGGCA CCGCCGGTGG CGTTTATCTG
GCGCGCGGCA GCCTGGTCGG GCTGGATGCC GGGGCTGCGT TACTGGTGGC TGCATTCGTT
CTGAAAATGC TGGAAATGAA CAATCGCCGT GACGCGCGGG TGCTGATTTT CCTTGGCTTC
TTTTGCGTGG CGGTCGGCTA TCTGTTCGAA GACAACCTGC TGTGGGCGCT CTTCAGTCTG
CTGCCGGTCA GCGCGCTGCT GGCTGCGTTG ATCGGCCTGC AACACACGGA CCTGGCCGGC
AGGTCGGCCG ACACGCTCAA GCTGGCATTC AAACTGATGG CGCAGGCACT GCCGTTGATG
CTCCTGCTGT TTCTGTTCTT CCCGCGTCTG GACCCGCTCT GGTCGCTGCC GCAGCCGAGC
AACAAAGGCG TCACCGGTCT GTCGGACAAC ATGGCACCCG GCGACATGGC GGAGCTGAGC
AAATCGCCCG CGCTGGTGTT CCGCGCCAGT TTCGAAGGGC CGATCCCGGC GCGCAATCAG
CTGTATTGGC GCGGTCTGAC CCTTGAGCAG TTCGATGGGC GTCGCTGGTC GCAGTCGGCC
CGCGCCCAGA CCGTACAGAT TGCGCAGTGG GAGAAACGCG GTGAGCCGCT GGCCTACAGC
GTTGTCATGG AAGCCAGCGG CCGGCCCTGG CTGCCAAGCC TCGACGTGGC AGAAACCACG
TTGCCGGACG TGCGGCAGAT GAGCGACTTC CGCCTGCAGC GCAGACGCTC CGTCGAGCAG
TCGCTGCTCT ACGCCGTCAA CTCATGGCCA CAGAGCGTCC GTGATCCGCT GTCCAGCGAG
CAGATCCAGC GTCAGGACCT GCAGTTGCCT GCCAAGGGCA ATGATCAGGC GCGGCAATGG
GCCGATGAAC TGCGCCGCCG CTACACCACA CCGGACGCCA TGGTCGCGGC GCTGCTCGGT
TACTTCAGCG ATCAGCCGTT TCACTACACC CTCAAGCCGG TGCCATTGGG CAATGACAGC
ATCAATGAAT TCCTGTTTGC CAGTCGTCAG GGGTTTTGCG CCCACTATGC CGGTGCCATG
ACCTTTGTCC TGCGCGCGGC AGGCATTCCG GCGCGCGTGG TGGCCGGGTA TCAGGGCGGC
GAACTGAACC CCGACGGGCA GTACCTGACT GTTCGCCAGT TCGACGCGCA TGCCTGGGTG
GAATACTGGC AGCCGGGCGT GGGCTGGCGC AGCGTCGACC CGACTGCAGC CGTGGCGCCG
CAACGTATCG AGCAAGGTCT GGAGCAGGCG CTGGCGGCGG ACGAAGCGTT TCTGCAGGAC
TCGCCCTATT CAGCGTTACG CTACCGCAAC GTGCCTTGGG TCAACGCCCT GCGCCTCAGT
TGGGATAACC TCAATTACGG CTGGCAGCGC TGGGTGCTGG GCTATCAGGG ACAACAGCAG
TTACAAATTC TCGGTCGCTG GTTTTCAGGC TTCCAGGCGC CGGTTTTTGT CCTGGGAAGC
CTGTTTTCAC TGGGCCTGGT CGCGTTATGG CTGTTCAAAC CCTGGCAACG CGAAAGCGAC
TCGCAACTGC GCGTGTTCAA CGCATTTGAA CGCTTGCTCG CCCGCCATGG TCTGCGTCGT
ATGCCGGGTG AAGGCGCTGA CGCATTCTGC CGCAGGGCGG TGCTCTACTT TCCGCAGCAT
GCCGAGGCCA TTGAAGGTTT CATCCGCGAA TTTCAAGCGC AGCGCTACGC TGGGCGGCTG
GCTTCGGCAA GCCGCTTGAG GCAGGCACTG AGCACGCTGC GCCGTGGTTT GCCATGGAGG
TTGTCAGCCG TCAGGGACAG GCATTCATGA
|
|---|
| Protein sequence | MNDKVKAVPA APIPRVSLTW LLVAQALVVL PFALHVPMSI MILWLGCTVW RVQAFRMRVR
LPGTWVKSGL LVGTAGGVYL ARGSLVGLDA GAALLVAAFV LKMLEMNNRR DARVLIFLGF
FCVAVGYLFE DNLLWALFSL LPVSALLAAL IGLQHTDLAG RSADTLKLAF KLMAQALPLM
LLLFLFFPRL DPLWSLPQPS NKGVTGLSDN MAPGDMAELS KSPALVFRAS FEGPIPARNQ
LYWRGLTLEQ FDGRRWSQSA RAQTVQIAQW EKRGEPLAYS VVMEASGRPW LPSLDVAETT
LPDVRQMSDF RLQRRRSVEQ SLLYAVNSWP QSVRDPLSSE QIQRQDLQLP AKGNDQARQW
ADELRRRYTT PDAMVAALLG YFSDQPFHYT LKPVPLGNDS INEFLFASRQ GFCAHYAGAM
TFVLRAAGIP ARVVAGYQGG ELNPDGQYLT VRQFDAHAWV EYWQPGVGWR SVDPTAAVAP
QRIEQGLEQA LAADEAFLQD SPYSALRYRN VPWVNALRLS WDNLNYGWQR WVLGYQGQQQ
LQILGRWFSG FQAPVFVLGS LFSLGLVALW LFKPWQRESD SQLRVFNAFE RLLARHGLRR
MPGEGADAFC RRAVLYFPQH AEAIEGFIRE FQAQRYAGRL ASASRLRQAL STLRRGLPWR
LSAVRDRHS
|
|---|
| |