Gene Psyr_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_2010 
Symbol 
ID3367524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand
Start bp2332534 
End bp2333769 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content59% 
IMG OID637652359 
Productdihydrolipoamide succinyltransferase 
Protein accessionYP_235091 
Protein GI66045250 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID[TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00422001 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.333592 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTATCG AGATCAAAGC CCCCTCTTTC CCGGAATCCG TTGCCGACGG CACCATTTCC 
AAGTGGTACA AAAAAGAGGG CGATGCGGTA AAGCGCGACG AGATGCTGGT CGATATCGAG
ACTGACAAGG TTGTCCTCGA AGTGCTGGCC GAAGCTGACG GCGTGATGGG AACGATCACC
AAGGAAGAGG GTGCCATCGT CCTGTCCAAC GAAGTGCTTG GGACATTGAA TGACGGTGCT
ACAGCATCTG CTGCTCCGGC ACCTGCTGCT GCGCCTGCCG CGGCACCTGC TTCGGCACCC
GCCGCTGCAC CGGCTGCAAC TGCTGGCGAA GAAGACCCGA TTGCTGCGCC TGCTGCGCGT
CAACTGGCTG AAGAAAACGG CATCAACCTG GCCAGCGTCA AGGGCACTGG TAAAGACGGC
CGTATCACCA AGGAAGACAT CGTTGCTGCC GTTGAAGCGA AGAAATCCGC TCCGGCCGCT
GCGCCTGCTG CCAAGCCTGC TGCTGCCGCT GCTCCTGTCG TCGCCGCTGG CGATCGCACC
GAGAAGCGTG TACCGATGAC TCGCGTGCGT GCAACGGTTG CCAAGCGTCT GGTCGAAGCC
CAGTCGAACA TGGCGATGCT GACCACGTTC AACGAAGTCG ACATGACCGA AGTCATGGCA
CTGCGTTCCA AGTACAAGGA CCTGTTCGAG AAGTCGCACA ACGGCGTACG CCTGGGCTTC
ATGTCGTTCT TCGTCAAGGC TGCCACCGAG GCGCTGAAAC GCTTCCCGGC CGTCAACGCG
TCGATCGACG GTTCCGATAT CGTTTACCAC GGCTATGCCG ACGTCGGTGT CGCGGTTTCC
AGCGATCGCG GTCTGGTCGT ACCGGTTCTG CGTAACGCAG AGCACATGAG CCTGGCTGAA
ATCGAAGGCG GCATCGCCAC CTTCGGCAAG AAAGCCCGTG ACGGTAAACT GTCCATCGAT
GAGATGACCG GCGGTACGTT CACCATCACC AATGGTGGTA CTTTCGGTTC GATGATGTCG
ACGCCGATCG TCAACCCGCC ACAGGCTGCA ATTCTGGGCA TGCACAACAT TCTGCAGCGT
CCGATGGCAG TCAATGGTCA GGTTGTGATT CGCCCGATGA TGTATCTGGC GTTGTCCTAC
GATCACCGTT TGATCGACGG CAAGGAAGCG GTAACCTTCC TCGTGACCAT CAAGAACCTG
CTGGAAGATC CTGCTCGTCT GCTGCTGGAT ATCTGA
 
Protein sequence
MAIEIKAPSF PESVADGTIS KWYKKEGDAV KRDEMLVDIE TDKVVLEVLA EADGVMGTIT 
KEEGAIVLSN EVLGTLNDGA TASAAPAPAA APAAAPASAP AAAPAATAGE EDPIAAPAAR
QLAEENGINL ASVKGTGKDG RITKEDIVAA VEAKKSAPAA APAAKPAAAA APVVAAGDRT
EKRVPMTRVR ATVAKRLVEA QSNMAMLTTF NEVDMTEVMA LRSKYKDLFE KSHNGVRLGF
MSFFVKAATE ALKRFPAVNA SIDGSDIVYH GYADVGVAVS SDRGLVVPVL RNAEHMSLAE
IEGGIATFGK KARDGKLSID EMTGGTFTIT NGGTFGSMMS TPIVNPPQAA ILGMHNILQR
PMAVNGQVVI RPMMYLALSY DHRLIDGKEA VTFLVTIKNL LEDPARLLLD I