| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2007 |
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| Symbol | sdhA |
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| ID | 3367521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2326912 |
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| End bp | 2328684 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637652356 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_235088 |
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| Protein GI | 66045247 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.82203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.426549 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAACA TTAATGCGCT TTCTTTCGAC GCCATCATCA TTGGTGGTGG CGGTGCCGGC
ATGCGCGCTG CGCTGCAGCT CGCCCAGGGC GGTCACAAGA CTGCCGTGGT CACCAAGGTC
TTCCCGACCC GCTCGCATAC CGTATCCGCC CAGGGTGGCA TCACCTGTGC AATCGCTTCC
GCCGATCCGA ACGATGACTG GCGCTGGCAC ATGTACGATA CCGTCAAGGG TTCCGACTAC
ATCGGTGACC AGGACGCTAT CGAATACATG TGTTCCGTAG GTCCGGAAGC GGTCTTCGAG
CTCGAGCACA TGGGCCTGCC GTTCTCCCGT ACCGAGCAGG GCCGTATCTA CCAGCGTCCG
TTCGGTGGCC AGTCCAAGGA CTTCGGCAAG GGCGGGCAGG CTGCCCGTAC CTGCGCTGCC
GCCGACCGTA CCGGTCACGC GCTGCTGCAC ACCCTGTATC AGGCCAACCT GAAGGCCGGC
ACTGTATTCC TCAACGAATA CTATGCAGTG GATCTGGTGA AGAACAACGA TGGCGCCTTT
GTCGGCATCA TCGCGATCTG CATCGAGACG GGCGAAACCT CGTACATCCG CGCCAATGCA
ACCGTGCTGG CGACCGGCGG TGCAGGCCGT ATCTACTCGT CGACCACCAA CGCCCTGATC
AATACCGGTG ACGGTATCGG CATGGCGCTG CGTGCCGGTG TGCCGGTTCA GGACATCGAA
ATGTGGCAGT TCCACCCGAC CGGCATTGCC GGCGCAGGTG TACTGGTCAC CGAAGGTTGC
CGCGGTGAAG GCGGTTACCT GATCAACAAG CACGGCGAGC GTTTCATGGA GCGTTACGCT
CCGAACGCCA AGGACCTTGC CGGTCGTGAC GTTGTGGCAC GTTCCATGGT CAAGGAAATC
ATTGCCGGTA ACGGCTGTGG TCCCGATGGC GATCATGTGA TGCTCAAGCT CGATCACCTT
GGCGAAGAAG TGCTGCACAG CCGTCTGCCA GGCATCATGG AACTGTCCAA GACCTTCGCT
CACGTCGATC CTGCGACCGC GCCGATTCCT GTCGTACCGA CCTGCCACTA CATGATGGGC
GGCGTTGCCA CCAACATTCA TGGCCAGGCG ATCACTCAGG ATGCGGCGGG CGTCGATCAG
ATCATTCCTG GTCTGTTCGC GGTCGGTGAA GTGGCTTGCG TATCGGTTCA CGGCGCCAAC
CGTCTGGGCG GCAACTCGCT GCTCGATCTG GTGGTGTTCG GCCGCGCGGC GGGTATCCAC
CTGGAGCAGG CGCTGCGTGA AGGCGTCGAT TATGCGCGCG CTTCCGAGTC CGACATCGAT
GCTGCCCTCG CACGCCTTGC CGGCCTGAAC GAGCGCACCA CCGGTGAAGA CGTTGCAACC
CTGCGAAAAG AGCTGCAGAG CTGCATGCAG AACTACTTCG GTGTATTCCG TACTGGCGAA
TACATGCAGA AGGGTATTGC CCAGCTGGCT GATCTGCGCG TACGTATCGC CAACGTCAAG
ATCAACGACA AGAGCCAGGC GTTCAACACC GCCCGTATCG AAGCGCTTGA ACTGCAAAAC
CTGCTGGAAG TTGCCGAAGC CACGGCGATT GCCGCAGAGC ATCGTAAAGA GTCCCGCGGC
GCTCACGCTC GTGAAGACTT CGAAGATCGC GATGACGAGA ACTGGTTGTG CCACACCCTG
TATTTCCCGG GTGACAAGAG TGTGACCAAA CGTGCCGTGA ACTTCTCGCC GAAAACTGTC
CCGACTTTTG AACCGAAGAT TCGGACTTAT TAA
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| Protein sequence | MANINALSFD AIIIGGGGAG MRAALQLAQG GHKTAVVTKV FPTRSHTVSA QGGITCAIAS
ADPNDDWRWH MYDTVKGSDY IGDQDAIEYM CSVGPEAVFE LEHMGLPFSR TEQGRIYQRP
FGGQSKDFGK GGQAARTCAA ADRTGHALLH TLYQANLKAG TVFLNEYYAV DLVKNNDGAF
VGIIAICIET GETSYIRANA TVLATGGAGR IYSSTTNALI NTGDGIGMAL RAGVPVQDIE
MWQFHPTGIA GAGVLVTEGC RGEGGYLINK HGERFMERYA PNAKDLAGRD VVARSMVKEI
IAGNGCGPDG DHVMLKLDHL GEEVLHSRLP GIMELSKTFA HVDPATAPIP VVPTCHYMMG
GVATNIHGQA ITQDAAGVDQ IIPGLFAVGE VACVSVHGAN RLGGNSLLDL VVFGRAAGIH
LEQALREGVD YARASESDID AALARLAGLN ERTTGEDVAT LRKELQSCMQ NYFGVFRTGE
YMQKGIAQLA DLRVRIANVK INDKSQAFNT ARIEALELQN LLEVAEATAI AAEHRKESRG
AHAREDFEDR DDENWLCHTL YFPGDKSVTK RAVNFSPKTV PTFEPKIRTY
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