Gene Psyr_1985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_1985 
Symbol 
ID3367499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand+ 
Start bp2304956 
End bp2306038 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content61% 
IMG OID637652334 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_235066 
Protein GI66045225 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.2378 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones5 
Fosmid unclonability p-value0.00707192 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCAAGC AGATTCTGAT TCTCCCAGGT GACGGTATTG GTCCGGAAAT CATGACCGAA 
GCGGTCAAGG TGCTGGAGCT GGCCAACGAA AAGTATCAAC TGGGCTTTGA ATTGACCCAC 
GACGTGATCG GCGGCGCGGC CATCGACAAG CACGGCGTGC CGCTGGCCGA TGAAACCCTG 
GAGCGTGCCC GTGCGGCCGA CGCCGTGCTG CTCGGCGCAG TCGGCGGACC GAAATGGGAC 
ACCATCGAGC GTGACATCCG TCCTGAGCGC GGTCTGCTGA AAATCCGTTC GCAACTGGGC 
CTGTTCGGCA ACCTGCGTCC GGCGATCCTT TATCCGCAAC TGGCCGACGC GTCGAGCCTG 
AAGCCGGAAA TCGTCGCCGG CCTGGATATC ATGATCGTTC GCGAGCTGAC CGGTGGCATC 
TATTTCGGCG CGCCACGCGG CACGCGGGTG CTGGATAATG GCGAGCGTCA GGCTTACGAC 
ACGCTGCCTT ACAGCGAAAG CGAGATCCGC CGCATTGCCA AGGTCGGTTT CGACATGGCC 
ATGGTGCGTG GCAAGAAGCT CTGCTCGGTG GACAAGGCCA ACGTGCTGGC GTCCAGCCAG 
CTGTGGCGCG AAATCGTCGA GCAGGTCGCC AGGGATTACC CTGAAGTCGA ACTGAGCCAC 
ATGTACGTCG ACAACGCTGC CATGCAACTG GTGCGTGCAC CCAAGCAGTT CGATGTGATC 
GTGACCGACA ACCTGTTCGG CGACATCCTC TCCGATCAGG CATCGATGCT CACCGGCTCC 
ATCGGCATGC TGCCGTCGGC CTCGCTGGAC ACGGCCAACA AGGGCATGTA CGAGCCATGT 
CACGGTTCGG CGCCGGACAT CGCCGGCAAA GGCATCGCCA ACCCGTTGGC GACCATTCTC 
TCGGTGTCGA TGATGCTGCG TTACAGCTTC AATCTGACCG ATGCGGCCGA TGCCATCGAA 
AAGGCTGTCA GCCTGGTTCT GGATCAGGGT ATCCGCACCG GCGACATCTG GTCGGAAGGC 
AAAGTCAAAG TCGGTACGCA GGAAATGGGC GATGCGGTAG TCGCCGCGCT GCGGAATCTG 
TAA
 
Protein sequence
MSKQILILPG DGIGPEIMTE AVKVLELANE KYQLGFELTH DVIGGAAIDK HGVPLADETL 
ERARAADAVL LGAVGGPKWD TIERDIRPER GLLKIRSQLG LFGNLRPAIL YPQLADASSL 
KPEIVAGLDI MIVRELTGGI YFGAPRGTRV LDNGERQAYD TLPYSESEIR RIAKVGFDMA 
MVRGKKLCSV DKANVLASSQ LWREIVEQVA RDYPEVELSH MYVDNAAMQL VRAPKQFDVI 
VTDNLFGDIL SDQASMLTGS IGMLPSASLD TANKGMYEPC HGSAPDIAGK GIANPLATIL 
SVSMMLRYSF NLTDAADAIE KAVSLVLDQG IRTGDIWSEG KVKVGTQEMG DAVVAALRNL