| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1901 |
|---|
| Symbol | |
|---|
| ID | 3367411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2176378 |
|---|
| End bp | 2177811 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637652247 |
|---|
| Product | soluble pyridine nucleotide transhydrogenase |
|---|
| Protein accession | YP_234983 |
|---|
| Protein GI | 66045142 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.961651 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000428846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAGT GGCGCCTCGG TCTGTTTAAA GGAGTACGCA TGGCTGTCTA CAACTACGAC
GTAGTGGTAC TGGGTTCCGG CCCTGCCGGA GAAGGCGCGG CAATGAACGC CGCCAAGGCG
GGGCGCAAGG TCGCCATGGT CGACAGCCGT CGGCAAGTGG GCGGTAACTG CACCCATTTG
GGCACCATTC CGTCCAAGGC CCTGCGTCAC TCGGTCAAGC AGATCATTCA GTTCAACACC
AACCCGATGT TTCGTGCCAT CGGCGAGCCG CGCTGGTTTT CGTTTCCGGA TGTGTTGAAA
AACGCCGAAA TGGTCATCTC CAAGCAAGTG GCCTCGCGCA CCAGTTACTA CGCCCGCAAC
CGCGTCGACG TGTTCTTCGG CACCGGCAGT TTTGCCGACG AGACCAGCAT CAACGTGGTC
TGCACCAACG GTGTGGTGGA AAAGCTGGTG GCCAACCAGA TCATCATCGC CACCGGTTCG
CGCCCCTATC GGCCGGCCGA CATCGATTTC AGTCACAAGC GCATCTACGA CAGCGACACC
ATCCTCAGCC TGGGCCATAC CCCGCGCAAG CTGATCATTT ATGGCGCCGG TGTGATCGGC
TGTGAATACG CCTCGATCTT CAGCGGCCTT GGCGTGCTGG TCGAACTGGT GGATAACCGT
GACCAGTTGC TGAGCTTCCT GGATTCGGAA ATCTCCCAGG CGCTGAGCTA TCACTTCAGC
AACAACAACG TCATGGTTCG CCACAACGAA GAGTACGAGA AGGTCGAAGG CCTGGATAAC
GGCGTTATCC TGCACCTGAA GTCCGGCAAG AAGATCAAGG CCGATGCCTT GCTGTGGTGC
AACGGCCGTA CCGGCAACAC CGACAAGCTG GGTCTTGAGA ACATTGGTCT GAAAGCCAAC
GGTCGTGGTC AGATCGAAGT GGACGAGACC TACCGCACCA GCGTTTCCAA CGTCTACGGC
GCAGGCGATG TGATTGGCTG GCCAAGCCTG GCCAGTGCTG CTTACGACCA GGGTCGTTCG
GCCGCGGGCA GCATGGTCGA CAATGGCAGC TGGCGTTATG TCAACGATGT GCCGACCGGG
ATCTACACGA TTCCCGAGAT CAGCTCGATC GGCAAGAACG AACACGAACT GACGCAGGCC
AAGGTGCCTT ACGAGGTGGG CAAGGCGTTC TTCAAGGGCA TGGCGCGCGC GCAGATTTCC
GGTGAGCGGG TCGGGATGCT GAAGATCCTG TTCCACCGCG AGACGCTCGA GGTGCTGGGC
GTGCATTGCT TCGGCGACCA GGCGTCCGAG ATCGTGCACA TCGGTCAGGC AATCATGAGT
CAGCCGGGTG AAGCGAACAC CATGAAGTAC TTCGTCAACA CCACGTTCAA CTACCCGACC
ATGGCCGAAG CCTATCGGGT AGCCGCATAC GACGGCCTCA ACCGGCTTTT TTAA
|
|---|
| Protein sequence | MPEWRLGLFK GVRMAVYNYD VVVLGSGPAG EGAAMNAAKA GRKVAMVDSR RQVGGNCTHL
GTIPSKALRH SVKQIIQFNT NPMFRAIGEP RWFSFPDVLK NAEMVISKQV ASRTSYYARN
RVDVFFGTGS FADETSINVV CTNGVVEKLV ANQIIIATGS RPYRPADIDF SHKRIYDSDT
ILSLGHTPRK LIIYGAGVIG CEYASIFSGL GVLVELVDNR DQLLSFLDSE ISQALSYHFS
NNNVMVRHNE EYEKVEGLDN GVILHLKSGK KIKADALLWC NGRTGNTDKL GLENIGLKAN
GRGQIEVDET YRTSVSNVYG AGDVIGWPSL ASAAYDQGRS AAGSMVDNGS WRYVNDVPTG
IYTIPEISSI GKNEHELTQA KVPYEVGKAF FKGMARAQIS GERVGMLKIL FHRETLEVLG
VHCFGDQASE IVHIGQAIMS QPGEANTMKY FVNTTFNYPT MAEAYRVAAY DGLNRLF
|
|---|
| |