Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1788 |
Symbol | |
ID | 3367296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 2039528 |
End bp | 2040727 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637652136 |
Product | major facilitator transporter |
Protein accession | YP_234873 |
Protein GI | 66045032 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0140849 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCGCT TTGAAACCGC TGGAAACGTA CAAACAAAAC CCGCTTCATG GTGGGCCGTT GGCAGCGTAT CGCTTGGGTC GTTCGCCACC GTCACCACTG AATTTCTGCC GGTCGGGCTG CTGCCCGATA TCGCTCGCGA CCTGGGAACC AGCATCAGCC AGACAGGCTT GATGATGGCC GTCCCTGGCA TCCTCGCGGC CATCTCGGCG CCGTCCTGTA TTGCCCTGTT CAGTCATGTC GACCGCAAGC GCCTGCTGCT CGGGCTGCTG TCGATATTGC TGGCCTCCAA CCTGATCGTC GCGTTGTCCA CGCACTTCTG GCTGACCCTG GCGGGCAGGG TCCTGCTCGG CTTCGCGCTG GGGGGATTCT GGACGATTGC CGGGTCGCTC GGGCCACGCT TGAGGCCCGG CAAGGAGGGC GTCAAGGCCA CCGCGTATGT GCTGGCGGGC GTCTCGATCG GCACTGTCGC CGGGATTCCG GCCGGCACGT TGATCGGTGA AGCCTTCGGC TGGCGTGCTG CGTTTGAAAC AGCGGCAGTG GTCACGGTTG CCGTGGGGGT GTTGATTGCA ACCTTCCTGC CTGCGTTGCC GGGCGAGCGC TCTGCCGGCA TCAGCCAGAT GTTGTCGCTG GCTGGCGAGC AGCGCATTCG TCGCATGTTC GCTGCCGCAC TGTTGATCTA TGTCGGGCAC TTCGCGGCTT ACACGTACCT CGCGCCCTTC GTGCAGGAAT TCGCGCATAT TCAGGGTCAG GCCCTGGGCG CATTGCTCTT CGCCTTCGGC CTGGCGGCTG TTGCAGGCAA CCTGGCCGGT GGAGCTCTGG CGGCCAGGAG CGCACCGTCC TCGGTGCTGA TCATGACCCT GCTGATGCTG GGTTCGCTGA CCGCGCTGCT GATGTTCGTC GGTAACCCGT GGCTGCTCTG GCCGGTGATT CTGGTCTGGG GGTTCGCGTT CGGGATGATC CCCATCACCA CGCAGATCTG GTGCTTCGAG GCTTCAAACG ATCGTGTGGA AGGCGTTCAG GCGCTGCTGG TCTGTGTGGT GAATCTGTCG ATTGGCGGCG GGGCGTTCAT TGGCGGTGCG GTGTCCGCTC GGGCCGGCTT TACCGCTGCC ATCGTGATCG GTGCGGTATG TGCTGCGCTG TCCATGCTCA CCGTGATGCT GGCGATGCGC AACTCAAAGC CGGTCAGTTG CACCGACTGA
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Protein sequence | MSRFETAGNV QTKPASWWAV GSVSLGSFAT VTTEFLPVGL LPDIARDLGT SISQTGLMMA VPGILAAISA PSCIALFSHV DRKRLLLGLL SILLASNLIV ALSTHFWLTL AGRVLLGFAL GGFWTIAGSL GPRLRPGKEG VKATAYVLAG VSIGTVAGIP AGTLIGEAFG WRAAFETAAV VTVAVGVLIA TFLPALPGER SAGISQMLSL AGEQRIRRMF AAALLIYVGH FAAYTYLAPF VQEFAHIQGQ ALGALLFAFG LAAVAGNLAG GALAARSAPS SVLIMTLLML GSLTALLMFV GNPWLLWPVI LVWGFAFGMI PITTQIWCFE ASNDRVEGVQ ALLVCVVNLS IGGGAFIGGA VSARAGFTAA IVIGAVCAAL SMLTVMLAMR NSKPVSCTD
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