Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1373 |
Symbol | |
ID | 3366868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 1555731 |
End bp | 1556597 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637651712 |
Product | peptidoglycan-binding LysM:peptidase M23B |
Protein accession | YP_234462 |
Protein GI | 66044621 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.142196 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCTCA CAGTCATTCA GCAGCTCAGG TCTTCAAGAA GTTATCAGCG TCTGGTGATT GGCATTGCTC TCAGTGTCCT TTTGGTCGGC TGCTCCAGCT CGCCTTCAGG CGGCGTTCGC GTGGTCGATC GCAACGGCAA TGCAGTCGCC CAGCGCCCGA CGGTGACCAC CGGCCAGTAT GTGGTCAGGC GCGGTGACAC ACTTTTTTCC ATTGCATTTC GTTACGGCTG GGACTGGAAG GCGCTGGCTG CCCGTAACCA GATCCCGGAG CCGTTTACCA TCAAGCCCGG TCAGACAATT CGCTTTGACG GACGCTCCTC TTCAACGCCG AACGTGGTTT CAACGTCCGG CGCGGGGCGT CCGGTGACGT CTACATCGAC CAGTACCGGC AGTTCCGGAT CCGTCAAAAC CACGGTCATG TCCAAACCCG TTGCGGTTGT ACCTGTGGTT ATACCTCCGT CGGCGACCAC CGGGACAGGC CCGGCCGGCA AGTCTCCGAC GGGTTGGACC TGGCCTTCGA GTGGCATTTT GATAGGAAAA TTTTCCTCAA ACGGCAGTTT GAATAAAGGA ATTGATATCG CTGGTGATTT GGGACAGCCT GTTTTGGCAG CGTCTGATGG TTCAGTTGTT TACGCCGGAA GTGGATTACG GGGCTACGGC GAATTGATCA TCATCAAACA CAGCGATACC TACGTCAGTG CCTACGGTCA TAACCGCAGG CTTTTGGTAC GGGAAGGACA ACAGGTCAAG GCAGGGCAGA CGATTGCCGA AATGGGGTCA ACAGGAACTG ACCGGGTGAA ACTGCATTTT GAGATTCGCC GCCAAGGGAA ACCTGTAGAT CCGTTAGGAT TCTTGCCACG TCGTTGA
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Protein sequence | MSLTVIQQLR SSRSYQRLVI GIALSVLLVG CSSSPSGGVR VVDRNGNAVA QRPTVTTGQY VVRRGDTLFS IAFRYGWDWK ALAARNQIPE PFTIKPGQTI RFDGRSSSTP NVVSTSGAGR PVTSTSTSTG SSGSVKTTVM SKPVAVVPVV IPPSATTGTG PAGKSPTGWT WPSSGILIGK FSSNGSLNKG IDIAGDLGQP VLAASDGSVV YAGSGLRGYG ELIIIKHSDT YVSAYGHNRR LLVREGQQVK AGQTIAEMGS TGTDRVKLHF EIRRQGKPVD PLGFLPRR
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