| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1370 |
|---|
| Symbol | truD |
|---|
| ID | 3366865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 1553050 |
|---|
| End bp | 1554108 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637651709 |
|---|
| Product | tRNA pseudouridine synthase D |
|---|
| Protein accession | YP_234459 |
|---|
| Protein GI | 66044618 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.16694 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAC TTGAACTGCT GGGCCCGCGA GCTTACGGCG AGGCGCTGGG GCGTGCAGTC
CTCAAGGCGA CTGCCGAAGA CTTTCAGGTC GACGAAGTGC TGGACATTCC GCTTTCCGGG
GATGGCGAGC ACTTGTGGCT ATGGGTCGAG AAGCGCGGTC TGAACACGGA AGAGGCGGCA
CGTCGGCTGG CCAGGGCTGC GGGCGTTCAG CTGCGCACAG TCAGCTACGC CGGGCTCAAG
GATCGCCAGG CACTGACCCG CCAGTGGTTC AGCATTCAAC TGCCGGGCAA GGCCGATCCT
GACCTGTCCG CGGCGCAGGA CGACACGCTG CAGATTCTCA AGAGCGGCCG CCACAAACGC
AAGCTGCAGC GCGGCGCCCA TGCGGCCAAT GGCTTCACGC TGCGTCTGAC CCAGCTGGAT
GCAGACAAGG ACGCCTTGAA TCAGCGTCTT GAAACCATCG CCCGGCAGGG CATCCCCAAT
TATTTCGGCG CGCAGCGTTT CGGTTATCAG GGCGGAAATC TTGGCGAGGC ACGCGATTAC
GCCGCCCGCA AGGCGCTGCC TGAGCAACGC GCGGTGCGTT CGCGACTGTT GTCCACGGCG
CGCAGTTACC TGTTCAATCG GGTGTTGGCC GCCCGGGTTG CCGATGGCAG CTGGCAGAAG
GCTCAGGTCG GTGATTTGCT CGCGTTCACC GACAGCCGCA GCTTTTTTCC GGCCGGGGTG
GATGAATGCA GCGATCCTCG TCTGGCGATC CTCGACCTGC ACCCCACCGG ACCACAGTGG
GGTGAAGGCC CTTCGCCAGC TGGCGGTGCG ACGGCAGCGC TGGAAAATAC CGTTGCCGAT
GACGAATCTG TGTTGCGTGA CTGGCTGGTC AGAGCGGGCA TGGAGCACGA ACGTCGCATC
CTGCGACTGC CCATTGGGCG GCTGACGTGG CATTATCCCG AGTCTGACAT TCTGCAACTG
GAATTCGTCC TTCCGCCCGG ATGCTTTGCT ACCGTTTTGG TCCGCGAACT CATCGATCTG
GTGCCGGTTG GGCAGACGGA CAGCTCATGC GTATTCTGA
|
|---|
| Protein sequence | MNELELLGPR AYGEALGRAV LKATAEDFQV DEVLDIPLSG DGEHLWLWVE KRGLNTEEAA
RRLARAAGVQ LRTVSYAGLK DRQALTRQWF SIQLPGKADP DLSAAQDDTL QILKSGRHKR
KLQRGAHAAN GFTLRLTQLD ADKDALNQRL ETIARQGIPN YFGAQRFGYQ GGNLGEARDY
AARKALPEQR AVRSRLLSTA RSYLFNRVLA ARVADGSWQK AQVGDLLAFT DSRSFFPAGV
DECSDPRLAI LDLHPTGPQW GEGPSPAGGA TAALENTVAD DESVLRDWLV RAGMEHERRI
LRLPIGRLTW HYPESDILQL EFVLPPGCFA TVLVRELIDL VPVGQTDSSC VF
|
|---|
| |