| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1200 |
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| Symbol | HrcC |
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| ID | 3366694 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 1357786 |
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| End bp | 1359888 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637651541 |
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| Product | outer-membrane type III secretion protein HrcC |
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| Protein accession | YP_234292 |
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| Protein GI | 66044451 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.138947 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAGG CCTTGATGTG GTTGCCTTTA TTGTTGATCG GGCTGTCCCC CGCCACGTGG
GCGGTGACCC CCGAAGCCTG GAAACATACG GCTTACGCCT ACGATGCCCG GCAGACCGAG
CTGGCGACAG CGCTGGCCGA CTTCGCCAAG GAATTCGGCA TGGCGCTGGA TATGCCGCCC
ATTCCCGGGG TCCTTGATGA CCGGATACGC GCTCAGAGCC CGGAAGAGTT TCTCGACCGC
CTGGGCCAGG AATATCACTT CCAGTGGTTT GTGTATAACG ACACGTTGTA CGTCAGCCCC
TCCAGCGAGC ACACCTCGGC ACGCATCGAA GTGTCATCCG ACGCGGTAGA TGACCTGCAG
ACTGCCTTGA CCGATGTAGG GCTGCTGGAC AAGCGCTTCG GGTGGGGGGT ACTGCCGAAC
GAGGGCGTGG TTCTGGTTCG TGGCCCGGCA AAATATGTGG AACTGGTGCG CGATTACAGC
AAGAAAGTCG AAGCGCCGGA AAAGGGCGAC AAGCAGGACA TCATCGTATT CCCGCTCAAG
TACGCCAGTG CCGCGGACCG CACCATTCGC TATCGCGATC AACAACTGGT GGTCGCCGGG
GTGGCCAGTA TTCTCCAGGA TTTGCTGGAT ACCCGTTCTC GTGGCGGGTC GATCAATGGT
ATGGATCTGC TGGGGCGAGG CGGTCGCGGT AACGGCCTGG CGGGCGGTGG CAGCCCGGAC
GCTCCGAGTC TGCCGATGAG CTCCAGCGGC CTCGATACCA ATGCGTTGGA GCAGGGCCTC
GATCAGGTGC TGCACTATGG CGGCGGCGGC AAAAGCGCTG GAAAAAGCCG CTCTGGCGGT
CGGGCCAACA TCCGTGTAAC GGCCGATGTC CGTAACAACG CCGTGCTGAT CTACGACTTG
CCCTCGCGCA AGGCCATGTA CGAAAAGCTC ATCAAAGAGC TGGATGTTTC GCGCAACCTG
ATCGAAATCG ACGCCGTGAT CCTCGACATC GATCGCAACG AGCTGGCAGA ACTGTCCAGC
CGCTGGAACT TCAATGCCGG GAGTGTCAAC GGGGGCGCCA ACATGTTCGA CGCTGGCACC
AGCTCCACCC TGTTCATTCA GAACGCCGGC AAGTTCGCTG CCGAACTGCA TGCGCTGGAA
GGTAACGGTT CAGCCTCGGT GATCGGCAAC CCGTCCATTC TTACCCTTGA AAACCAGCCG
GCCGTGATCG ACTTCAGTCG CACCGAATAC CTCACCGCGA CGTCGGAACG CGTGGCCAAT
ATCGAGCCCA TCACCGCAGG CACCAGTTTG CAGGTGACTC CGCGCTCGCT GGATCACGAT
GGCAAGCCTC AGGTGCAACT GATCGTCGAT ATCGAGGATG GTCAGATCGA CATCTCCGAC
ATCAATGACA CGCAGCCAAG TGTGCGCAAA GGCAATGTCA GTACCCAGGC CGTCATAGCC
GAACACGGTT CACTGGTCAT CGGCGGTTTC CATGGCCTTG AAGCCAACGA CAAGGTCCAC
AAGGTTCCGT TGCTGGGCGA CATCCCCTAC ATCGGCAAAC TGCTGTTCCA GTCCCGCAGC
CGTGAACTGA GCCAGCGCGA GCGCCTGTTC ATTCTGACGC CAAGACTGAT TGGCGACCAG
GTCAACCCGG CTCGCTATGT GCAGAACGGC AACCCTCACG ATGTCGATGA TCAGATGAAA
AGGATCAAGG AACGGCGTGA CGGCGGTGAG CTGCCTACCC GCGGCGACAT TCAGAAAGTC
TTCACGCAGA TGGTCGATGG CGCTGCGCCA GAGGGCATGC ATGATGGCGA AACACTGCCC
TTTGAAACCG ACAGCCTGTG TGACCCGGGT CAGGGCCTGA GCCTCGATGG CCAGCGCTCG
CAATGGTATG CACGCAAGGA CTGGGGTGTG GCCGTCGTGG TAGCGCGTAA CAATACCGAC
AAACCGGTGC GCATCGACGA GAGTCGTTGC GGTGGTCGCT GGGTCATCGG CGTCGCCGCC
TGGCCCCACG CATGGCTGCA ACCGGGCGAG GAGAGCGAAG TGTATATCGC GGTACGTCAG
CCACAGATAT CGAAAATGGC CAAAGAGAGC CGGCCATCAC TGCTCCGGGG GGCAAAGCCA
TGA
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| Protein sequence | MRKALMWLPL LLIGLSPATW AVTPEAWKHT AYAYDARQTE LATALADFAK EFGMALDMPP
IPGVLDDRIR AQSPEEFLDR LGQEYHFQWF VYNDTLYVSP SSEHTSARIE VSSDAVDDLQ
TALTDVGLLD KRFGWGVLPN EGVVLVRGPA KYVELVRDYS KKVEAPEKGD KQDIIVFPLK
YASAADRTIR YRDQQLVVAG VASILQDLLD TRSRGGSING MDLLGRGGRG NGLAGGGSPD
APSLPMSSSG LDTNALEQGL DQVLHYGGGG KSAGKSRSGG RANIRVTADV RNNAVLIYDL
PSRKAMYEKL IKELDVSRNL IEIDAVILDI DRNELAELSS RWNFNAGSVN GGANMFDAGT
SSTLFIQNAG KFAAELHALE GNGSASVIGN PSILTLENQP AVIDFSRTEY LTATSERVAN
IEPITAGTSL QVTPRSLDHD GKPQVQLIVD IEDGQIDISD INDTQPSVRK GNVSTQAVIA
EHGSLVIGGF HGLEANDKVH KVPLLGDIPY IGKLLFQSRS RELSQRERLF ILTPRLIGDQ
VNPARYVQNG NPHDVDDQMK RIKERRDGGE LPTRGDIQKV FTQMVDGAAP EGMHDGETLP
FETDSLCDPG QGLSLDGQRS QWYARKDWGV AVVVARNNTD KPVRIDESRC GGRWVIGVAA
WPHAWLQPGE ESEVYIAVRQ PQISKMAKES RPSLLRGAKP
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